Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32930 230 / 2e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007457 [exp] 331 / 1e-112 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233500 [exp] 264 / 6e-92 AT4G32930 233 / 2e-79 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05907 [flax] [poplar] DUF866 Eukaryotic protein of unknown function (DUF866)
Representative CDS sequence Show only first row Show all	>Lus10005503 pacid=23182556 polypeptide=Lus10005503 locus=Lus10005503.g ID=Lus10005503.BGIv1.0 annot-version=v1.0 ATGGTGAACTTTACGCTTATGATAACCGGCGATCTAGAGAACATCGCCGCCCTTCAGCCTCGCGGCGGCTGCGACGATCCTACTTTCTCTTATTTCTTCA AGTTGAAATGTGGGAGTTGTGGAGAAGTTAGCCAGAAGGAAACCTGCGTTGTTTTGGAGGAAAAGGTTCAACTTCCTTCGAGCAAAGGCACCGCTAACCT TGTTCAGAAGTGCAAGTTTTGTGGGAGGGAAGGAAATGTGTCCATGATCCCTGGGAAAGGGAAACCACTCACCCAGGAAAGCAGTGAAGCTGGGAAGTAT GTGCCACTGATGATGTTTGATTGCAGAGGTTATGAGCCTGAGGGGTTCTTATTTGGCAGTGGTTGGATAGCTGAATCAGAGGCGGGGACTAAATTTGAGG ATATCGACTTGTCTGGAGGGGACTTTATGGAGTATGATGAGAAGGGAGAGTGTGCAGTGATGATATCAAACCTCTCATCTAAATTTGAGGTCACCAAGTA G
AA sequence Show only first row Show all	>Lus10005503 pacid=23182556 polypeptide=Lus10005503 locus=Lus10005503.g ID=Lus10005503.BGIv1.0 annot-version=v1.0 MVNFTLMITGDLENIAALQPRGGCDDPTFSYFFKLKCGSCGEVSQKETCVVLEEKVQLPSSKGTANLVQKCKFCGREGNVSMIPGKGKPLTQESSEAGKY VPLMMFDCRGYEPEGFLFGSGWIAESEAGTKFEDIDLSGGDFMEYDEKGECAVMISNLSSKFEVTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32930			unknown protein		Lus10005503 [exp]	0	1
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	2.4	0.9098
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	3.9	0.9126
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	4.9	0.8980
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	4.9	0.9083
AT5G64180			unknown protein		Lus10008120 [exp]	5.7	0.8842
AT1G64385			unknown protein		Lus10032376 [exp]	6.2	0.9090
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	7.7	0.8935
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	9.5	0.8943
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010433 [exp]	9.6	0.8714
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	10.4	0.8686

Compare expression of checked genes

Lus10005503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.