Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11730 493 / 9e-175 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 468 / 5e-165 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 465 / 4e-164 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 455 / 1e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 374 / 2e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 355 / 3e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 332 / 3e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 325 / 2e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 317 / 8e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 309 / 2e-99 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005505 [exp] 748 / 0 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 711 / 0 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 471 / 2e-166 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 468 / 4e-165 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 372 / 4e-127 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 372 / 6e-127 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 358 / 3e-121 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 357 / 4e-121 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 354 / 1e-119 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233400 [exp] 546 / 0 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 543 / 0 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 499 / 2e-177 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 386 / 2e-132 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 374 / 4e-128 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 372 / 3e-127 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 370 / 2e-126 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 360 / 1e-122 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 358 / 2e-121 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 354 / 2e-120 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10005504 pacid=23182576 polypeptide=Lus10005504 locus=Lus10005504.g ID=Lus10005504.BGIv1.0 annot-version=v1.0 ATGCTATCCCGAGTTGTTCCGCTAGAGGAAAGCAAAGACCCTACTACTCTTCCAACAACTACCTCATCATCGTCAGCTGTTATCAACAGCAAGCCCAGGG GATTCCCTTTGCGCCTCCTACGGTTATTCTTGCTCTTTCTATCCCTTTGTTTTGCCTTCTCCTTCATCAGTATATACGCTATCAAGCGTTTCGGTGGTCG GAATGTCATCAACTCCGTAGGCTTCATCAATTCCCCTTCCTCCACCTGCATTGGTGCTGCTGCTGATTTTACCCTCCACCAATTTATCACCCCACCTTCC AATTTGCTCCACAAGATGACCGATGAAGAGCTGTTTTGGAGGGCTACCCTTGTCCCTAGAATCCAGCAATACCCTTTCAGGAGAGTCCCCAAGATTGCTT TCATGTTCCTTTCTAAGGGTCCTTTGCCCCTTGCCCCTCTTTGGGACAGATTCTTCAAGGGTCATCAAGGGCGTTACTCCATTTACCTCCATTCACTCCC CACATTCCAAGCCAAGTTCCCACCTTCTTCTGCCTTCTACCGGAGGCAGATTCCTAGCAAGGTTTCAGAATGGGGCAAGATGAGTATGTGTGATGCTGAA AGAAGACTCCTAGCTAATGCATTGCTTGACATCTCCAACGAGTGGTTCATTCTCCTATCAGAATCCTGCATTCCTCTCTACAATTTTAGCATCATATACC GTTACATAGCAAAGTCCAAATACAGTTTTGTCGGCGCGTTTGATGACGAAGGTCCATATGGGAGGGGACGCTACAATGAAAACATGGGACCTGAGGTAAA CATTACCCAATGGCGGAAAGGATCACAGTGGTTCGAGCTGAACCGAGAGCTTGCAGTCAAGATAGTGGAAGACACCAAGTATTACCCGAAGTTTGAAGAA TTCTGCAAGCCTCACTGTTACGTGGATGAGCATTATTTCCCAACAATGCTGACAATTGAAGCAACACCCCAATTGGCAAATCGAAGCGTCACCTGGGTGG ACTGGTCTAGAGGTGGTGCTCACCCGGCAACTTTTGGAAGGGCCGACATAACAGAAGAGTTCTTCAAGAAGCTATACGAAAGGCAGAAATGCAAGTACAA TGATAAGGCCTACAAGATATGCAGTCTTTTCGCCAGGAAATTCTCCCCAAGTGCGTTGGAACCGTTGTTGCACATATCAAAGGAGGTGTTGGGATTTTGA
AA sequence Show only first row Show all	>Lus10005504 pacid=23182576 polypeptide=Lus10005504 locus=Lus10005504.g ID=Lus10005504.BGIv1.0 annot-version=v1.0 MLSRVVPLEESKDPTTLPTTTSSSSAVINSKPRGFPLRLLRLFLLFLSLCFAFSFISIYAIKRFGGRNVINSVGFINSPSSTCIGAAADFTLHQFITPPS NLLHKMTDEELFWRATLVPRIQQYPFRRVPKIAFMFLSKGPLPLAPLWDRFFKGHQGRYSIYLHSLPTFQAKFPPSSAFYRRQIPSKVSEWGKMSMCDAE RRLLANALLDISNEWFILLSESCIPLYNFSIIYRYIAKSKYSFVGAFDDEGPYGRGRYNENMGPEVNITQWRKGSQWFELNRELAVKIVEDTKYYPKFEE FCKPHCYVDEHYFPTMLTIEATPQLANRSVTWVDWSRGGAHPATFGRADITEEFFKKLYERQKCKYNDKAYKICSLFARKFSPSALEPLLHISKEVLGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005504 [exp]	0	1
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005505 [exp]	1.0	0.9714
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	2.8	0.9271
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	4.2	0.9361
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	4.7	0.9364
AT2G20760			Clathrin light chain protein (...		Lus10011194 [exp]	5.9	0.9261
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	7.5	0.9155
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10022453 [exp]	15.1	0.9240
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	15.9	0.9163
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	16.5	0.8994
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	17.5	0.9013

Compare expression of checked genes

Lus10005504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.