Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61730 70 / 5e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 69 / 8e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 68 / 1e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 66 / 7e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 65 / 1e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 62 / 8e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 56 / 7e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 56 / 1e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00238 53 / 1e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 52 / 4e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002794 [exp] 375 / 6e-131 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 356 / 8e-122 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 162 / 8e-48 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 164 / 2e-47 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 161 / 2e-47 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 81 / 5e-17 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 63 / 9e-11 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 63 / 1e-10 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 61 / 4e-10 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293900 [exp] 155 / 9e-44 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 144 / 9e-40 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 69 / 1e-12 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 61 / 3e-10 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 56 / 2e-08 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 42 / 0.0004 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10005506 pacid=23182546 polypeptide=Lus10005506 locus=Lus10005506.g ID=Lus10005506.BGIv1.0 annot-version=v1.0 ATGGTTGAGATTGTTGACTTGTGCAAAAGAGAGGAAGAAGAAGAAGAAGACGAAGAAGACTCCTCTACTGAAAGCGAGGACGAAGATGATGGAGCCTCCC CAGAAGAAAAGCCGTCTGCTCAACGATCCCAAGCTCAGCTGAAAAAGCCAGCGATTCAGGAGCAGGATGATGGTTCTGAATCTGAGGAGGATTCCGACGA CCCCGACACCGATTCCGACTCGGATCCTCCTCCGCCTCCCAAAACCGTCGCGAATGTGAAGCCGATCGCTTCAAAACCTATGGAGGCCAAGTCTTCTTCT AAGGCAACGACTTCGAACGCTACTGCCTCAAAGGCGAGGAAGAGGGGAACCGAGACCGAGACTGAGGTGAAGGACACTAAGCGGCGGAAGGAGTCGTCTT CGTCGGCTGCGGCGGAGAAAACTGAAGATTCCGCCAAGAAGCAGCTGTTTCAACGCATCTGGGGGGAGGACGATGAGATTGCTCTGTTAAACGGGCTTCT GGAGTTCTCAAAGAGAGGAGTGGATCCTTTCAAGGAGATAGCTGATGTGTACGATTTCGTCAAGAAATCTCTCAACATTGACATCTCTGTGTCTCAGCTG AAGGAGAAAGCTGCCCGGTTGAAGAAGAAGTTTACGAAGAAGTCCAACGGGAAAGATGGTGAAGATAAGAGCTTCGCCAAACAACATGACCAGAAGTGTT TCGACTTGTCCAAGAAGCTCTGGGGCTCGGAAGCATCCAGCCGAGCTGTACAAGCCAATAATAATGCTACTCCCAAGCCAAATAAAAAGGAAAAGGGCAA CAGCAGCAATGGAATTACTCCTAAGCGACATGCGGGTGTAGAGGATGGCGCTGCAGATCGTAAGAAGGATATGTTGCCTGGGGAAGATATAAGGGATGTT GTGATTAAGAAGGGATTGGACATGGTGGAAGGATCAAAGAGGGGCGAGTTTGAGGAAAGATGGAAGGATGTGAATGTGGCAACTTTGAAGCTCTTTGTAC AACGGGATCAGTTGGTGGTTGATCAGGCTAAGTTGATGCTGGCTGCCATGGATGAGGATTAG
AA sequence Show only first row Show all	>Lus10005506 pacid=23182546 polypeptide=Lus10005506 locus=Lus10005506.g ID=Lus10005506.BGIv1.0 annot-version=v1.0 MVEIVDLCKREEEEEEDEEDSSTESEDEDDGASPEEKPSAQRSQAQLKKPAIQEQDDGSESEEDSDDPDTDSDSDPPPPPKTVANVKPIASKPMEAKSSS KATTSNATASKARKRGTETETEVKDTKRRKESSSSAAAEKTEDSAKKQLFQRIWGEDDEIALLNGLLEFSKRGVDPFKEIADVYDFVKKSLNIDISVSQL KEKAARLKKKFTKKSNGKDGEDKSFAKQHDQKCFDLSKKLWGSEASSRAVQANNNATPKPNKKEKGNSSNGITPKRHAGVEDGAADRKKDMLPGEDIRDV VIKKGLDMVEGSKRGEFEERWKDVNVATLKLFVQRDQLVVDQAKLMLAAMDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	0	1
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	1.4	0.8390
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	1.7	0.8562
AT4G21110			G10 family protein (.1)		Lus10023881 [exp]	3.6	0.7719
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	5.2	0.8246
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	7.1	0.7775
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	8.5	0.7840
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	10.0	0.7963
AT3G06200			P-loop containing nucleoside t...		Lus10041236 [exp]	10.4	0.7908
AT1G71730			unknown protein		Lus10042772 [exp]	11.2	0.7532
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	12.6	0.7665

Compare expression of checked genes

Lus10005506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.