Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000296 [exp] 253 / 3e-87 ND / Lus10007455 [exp] 194 / 5e-59 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029852 [exp] 80 / 6e-18 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05064 [flax] [poplar] Nsp1_C Nsp1-like C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10005508 pacid=23182570 polypeptide=Lus10005508 locus=Lus10005508.g ID=Lus10005508.BGIv1.0 annot-version=v1.0 ATGGTTCTGCTATGCAAACCGATGAATTTTCTACCTCCAGAACTCGTATCCAGGCTGCTTCCTCCTTCTGGCGTGGGTTCTTCTTCCAAAGATGAGAATG TGCAGCATATGCAAGAAGCATCTGAAGAACAACGAGCAGGGGATGAAGGGAATTCGTTTGGAAATATGGAGAAAGACGTTGTTGACATGATTGACCGACT TTCGAGTTTGAGTTGTGATGAAAATGAAATGCCAGAGAGTGTGGTAGCTTGGTTGGCAGAGCTGGAACAAAGCATGAAGGTGAAGACTGCTCAAGCTGAA AACTTGAAGGAGGTGGATGCAAGGTTGACAGCGGGAGGATTGGAGCTGAGTTTTCTGGACGGAGAATTGTCAAGGATTTTGGTGGAGGAAGAGGAGATAG AGGCTGAGCTTCAACGTTTGATGAACAAGAACAGTGAGATAGATGGTGCAGCATTAGGAACCAATTCACAGTAA
AA sequence Show only first row Show all	>Lus10005508 pacid=23182570 polypeptide=Lus10005508 locus=Lus10005508.g ID=Lus10005508.BGIv1.0 annot-version=v1.0 MVLLCKPMNFLPPELVSRLLPPSGVGSSSKDENVQHMQEASEEQRAGDEGNSFGNMEKDVVDMIDRLSSLSCDENEMPESVVAWLAELEQSMKVKTAQAE NLKEVDARLTAGGLELSFLDGELSRILVEEEEIEAELQRLMNKNSEIDGAALGTNSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005508 [exp]	0	1
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	14.1	0.8557
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	22.4	0.8546
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	24.0	0.8406
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	26.0	0.8518
AT1G11655			unknown protein		Lus10002065 [exp]	26.5	0.8392
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	29.1	0.8323
					Lus10003550 [exp]	29.8	0.8291
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	31.6	0.8324
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10038937 [exp]	36.4	0.8374
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019361 [exp]	40.3	0.8386

Compare expression of checked genes

Lus10005508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.