Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30790 1417 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007701 [exp] 2212 / 0 AT4G30790 1493 / 0.0 unknown protein Lus10007700 [exp] 1915 / 0 AT4G30790 1327 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103000 [exp] 1613 / 0 AT4G30790 1392 / 0.0 unknown protein Potri.006G180800 [exp] 1549 / 0 AT4G30790 1261 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10377 [flax] [poplar] ATG11 Autophagy-related protein 11
Representative CDS sequence Show only first row Show all	>Lus10005509 pacid=23177346 polypeptide=Lus10005509 locus=Lus10005509.g ID=Lus10005509.BGIv1.0 annot-version=v1.0 ATGAGTTCAAGCATCACACAAGGGTTGGTTCATCAGGGAAAGCTGCTTCTCCACATAGCAGAAAACGGCCATTCCTTTGAGCTTGATTGCGATGAAACCA CCCTTGTCGAAGCAGTTATGCGGTATGTGGAATCTTATTCAGGGATTAACTTGAATGATCAGCTTGTTCTGTGTTTCGATATGAAACTTGAACCCCATCG CCCGCTGGCTGGTTACAAGCTTCCATCGAGCAATAGAGAAGTGTTCATATTCAATAAAGCAAGGCTTCAGAACAATTCCCCACCACCTGCTCCGGAGCTG GTGGATGTAGTTGAAGTTTCGGACCCTCCGTCACCAGCAGCTAGTCACGAACCGCATCCTTTGGACGACGCTACGGACCCTGCATTGAAGGCTTTGCCGT CTTACGAGAGGCAGTTTCGGTACCATTTCCAGAAGGGTCATGCAATTTACAGTAGAACTCAGGTGAAGTATGAAACTTCTGAGAGGCTATTGAGAGAACA AAAGGTTCAGGAGAGGGCTGTGGAGGTTGGTAGGGGTAATTTGGATCAGTATTATAAGGTAATTCACCAGAATTACGTGGAGTTCATGAAGCGGTATACA CAGCAGCATCGTTTTCATTCAGAAATCCTGCTGAACTTGGGAAGGGATTTGGAGAAGCTGAGGACTGTAAAACTTCATCCAACTTTGCAGATTGGTTCTC GCAAGTGTTTAATGGATTTCGTCAAGGAAGAGACCTTGCGCAAGGCTGTAGAGAATTGTAGCAACTCTCATAAACAATTTGAGAAGAAGGTTTTAGAGTT TAAGCAGATGTTTGGCGACGTGAAGCGCAAGGTGGAGGAGTTATTTGCCTCGCGGGCTTCTGTTCCAATAAAAAACTTGGAGCTAACAATAAAAGAGCAT CAGCGGTTCATAAATGAACAGAAGAGTATAATGCAGTCTTTGAGCAAAGATGTAAACACAGTAAAGAAATTAGTGGATGACTGCTTATCCAGCCAATTAT CATCTTCTCTTCGGCCTCATGATGCTGTTTCAGCATTGGGTCGTATGTATGATGTCCATGACAAGAACCACCTGCCCAAGATGGAAAATTGCAGTCGTTC AATTTGCACCCTACTTGACTTTTGCAAGGAAAAGAAGAATGAAATGAACGTCTTTGTGCATGATTACATGCAAAAGATAACTTATATTTCTTATATAATC AAAGATGCAAAGTTACAGTTCCCTGTTTTCAAAGAAGCGATGGTACGCCAGGATGATCTATTTACCGACCTGAAGCTGGTTCGAGGAATTGGTCCTGCCT ACAGAGCCTGCTTTGCGGAGATAGTAAGAAGAAAGGCTTCAATGAAAATATATATGGGTATGGCCGGGCAACTGGCTGAAAGGCTCGCTACGAAAAGGGA GGCCGAGATCAGGAGACGAGAGGAATTTATAAAAGCAAACAGTGTGTATATACCAAGGGATATCTTGGCATCGATGGGGCTATACGATACTCCAAGCCAG TGTGATGTCAATGTTGCTCCTTTCGACACTAATTTGCTCAATATTGACCTTGCTGACCTGGACCGTTATGCCCCAGAGTATTTAGCTGCTCTGCCCTATA AGGGTGATAAGCAGGGAAGCATGAAAGGTTCGTTTTGTACTTCTAATGAGAGCTCCCACTTAGCTGAGGTAGACGAAGTTTCAGCGGATAATATATCGAG AGGCGATTCTGACGAGCTTCTTGAGGGTTGTGATTTAGTAGATATTGCTGGAACAAGCAGAATGGAGGTTGAAAATGCAAAGTTGAAAGCCGAAGTTGCT TCGAAAATAGCCCTAATCTGTTCTCTCCTTCCAGATATTGAATATGAGTTGCTTGACGATAGTAAAACCGAGAGGGTGTTAAAAAATGCAGCAGAGAAGA CGGCTGAGGCTTTGCGACTGAAAGACGAGTATGGGAAGCATCTGCTTTCTATCCTTAAGGAAAAGCAAACCCAGTGTACAGCATACGAGAAACGGATACA AGAGCTAGAGCAGAGATTGTCTGATCAATATATGCAGGAGCAGAAACTTGTGAATGATAAAGACGCATCTGATTCTTCTCTTTCAGCTACAACTATTGGT GATAACAAACCTGAGCTCTCAAGTGATGGAGAAACCCAGTTGCCATATTCATCTACTTCAGAACCCATGGATGAGGTCTCTTGTGTTTCTAATTTTCTGG ATACAAAGTTGGGGCGTTTCACTAGGCAACAAAGCAAAGGTCGGGAAGATGAACATATGATGGATTCCTCAGGAATCTTGAATTCGCAGTTAGACTCTTC AATGCCAGAACCACAAGGAGAAGAGCTGCAGGCTGGTGACAAAGAAGGGAAAGACAAGATGGCGGGGCAATTGGGCATGTCGATAGCAAATAGCTGCACA GCGGAGAGCATGCCCGAGCCGGACCTGCCTTCTGATCCAGCCATTGAAGATAAAACTACTGGAGATCTGCTGGAGTTGCAGAATGAACTTGCAGACAAAT CAAACCAGTTGAGTGAAACAGAAGCTAACCTCGGAGCTGCTATGGACGAGGTTGCCATGCTTACTAAAGAGTTGGAAGCTAGTCGAAAGCTTCTAAACGA ATCTCAGATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCCAGAGAGGAGGCCCAAACTCACCTCTGTGCGGCTGATAGGAGGGCTTCAGAATAC AGTGCTCTACGTGCATCTGCTGTGAAAATGCGTGGTCTTTTTGAAAGACTCAGGAACTGTGTATATACCCCTGGTTCAGTCACTGCGTTTGCAGATTCAT TGCGCTCTTTAGCTCAATCTCTGGCCAACTCCCTCAATGAGAATGAAGAGGATGGAACTGTGGAGTTCCGGAAATGCATAAGGGTTCTTGCAGAGAAAGT TACGTTCTTGTCCAGGCACCGTGATGAGCTACTAGACAAGTACCCAAAGCTAGAATCTGCAAATGAACAACTGTTGAAGGACGTGGAGGAGAAGAAAGAG CTGGTTACCACTTTATACAAAAAGCACCAACTTGAGAAACAGGCAAACAAAGAGAGGATCTCATTCTGCCGATTTGAAGTCCATGAGATTGCTGCATTCG TTCTCAACTCCAGTGGCCATTATGTGGCTATCAGCAGGAACTGCTCAAACTACTATTTATCTGCAGAATCAGTCGCATTGTTCACTGACCATCTTCCCAG CCAACCTAGCCATATTGTTGGACAGATAGTGCATATCGAACGTCAAATTGTGAAGCCACTGCTCACTCGAGCTAACTCGTCTCCAATGACCAGGCCTGAC CATGGAAGATCAGTAGCAGCAGCAGGAGAACAGGGTAGCGGTGGCCTGAACTCTGACGTGGTGGGAGCTGACCGACGATTGGCTGTGAACTTGGGACAGG CGTCGTCTTCGTCTAACCCTTTTAACCTCCCAATTGGTTGTGAATATTTCATAGTGACGATAGCTATGCTACCTGATACCACCATTCATTCTCCATCATC CACTTCCTGA
AA sequence Show only first row Show all	>Lus10005509 pacid=23177346 polypeptide=Lus10005509 locus=Lus10005509.g ID=Lus10005509.BGIv1.0 annot-version=v1.0 MSSSITQGLVHQGKLLLHIAENGHSFELDCDETTLVEAVMRYVESYSGINLNDQLVLCFDMKLEPHRPLAGYKLPSSNREVFIFNKARLQNNSPPPAPEL VDVVEVSDPPSPAASHEPHPLDDATDPALKALPSYERQFRYHFQKGHAIYSRTQVKYETSERLLREQKVQERAVEVGRGNLDQYYKVIHQNYVEFMKRYT QQHRFHSEILLNLGRDLEKLRTVKLHPTLQIGSRKCLMDFVKEETLRKAVENCSNSHKQFEKKVLEFKQMFGDVKRKVEELFASRASVPIKNLELTIKEH QRFINEQKSIMQSLSKDVNTVKKLVDDCLSSQLSSSLRPHDAVSALGRMYDVHDKNHLPKMENCSRSICTLLDFCKEKKNEMNVFVHDYMQKITYISYII KDAKLQFPVFKEAMVRQDDLFTDLKLVRGIGPAYRACFAEIVRRKASMKIYMGMAGQLAERLATKREAEIRRREEFIKANSVYIPRDILASMGLYDTPSQ CDVNVAPFDTNLLNIDLADLDRYAPEYLAALPYKGDKQGSMKGSFCTSNESSHLAEVDEVSADNISRGDSDELLEGCDLVDIAGTSRMEVENAKLKAEVA SKIALICSLLPDIEYELLDDSKTERVLKNAAEKTAEALRLKDEYGKHLLSILKEKQTQCTAYEKRIQELEQRLSDQYMQEQKLVNDKDASDSSLSATTIG DNKPELSSDGETQLPYSSTSEPMDEVSCVSNFLDTKLGRFTRQQSKGREDEHMMDSSGILNSQLDSSMPEPQGEELQAGDKEGKDKMAGQLGMSIANSCT AESMPEPDLPSDPAIEDKTTGDLLELQNELADKSNQLSETEANLGAAMDEVAMLTKELEASRKLLNESQMNCAHLENCLHEAREEAQTHLCAADRRASEY SALRASAVKMRGLFERLRNCVYTPGSVTAFADSLRSLAQSLANSLNENEEDGTVEFRKCIRVLAEKVTFLSRHRDELLDKYPKLESANEQLLKDVEEKKE LVTTLYKKHQLEKQANKERISFCRFEVHEIAAFVLNSSGHYVAISRNCSNYYLSAESVALFTDHLPSQPSHIVGQIVHIERQIVKPLLTRANSSPMTRPD HGRSVAAAGEQGSGGLNSDVVGADRRLAVNLGQASSSSNPFNLPIGCEYFIVTIAMLPDTTIHSPSSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30790			unknown protein		Lus10005509 [exp]	0	1
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	3.2	0.9456
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10039235 [exp]	3.7	0.9339
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	6.0	0.9413
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	6.3	0.9373
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	11.9	0.9437
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	15.6	0.9207
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	16.2	0.9319
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	18.0	0.9386
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	18.3	0.9103
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10042348 [exp]	18.4	0.8936

Compare expression of checked genes

Lus10005509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.