Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19880 162 / 6e-48 Glutathione S-transferase family protein (.1.2.3) AT5G45020 154 / 3e-45 Glutathione S-transferase family protein (.1.2) AT5G44990 124 / 3e-34 Glutathione S-transferase family protein (.1.2.3) AT5G44000 81 / 3e-17 Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036209 [exp] 171 / 2e-51 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10038348 [exp] 169 / 6e-51 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10014304 [exp] 152 / 1e-44 AT4G19880 499 / 3e-179 Glutathione S-transferase family protein (.1.2.3) Lus10027233 [exp] 81 / 3e-17 AT5G44000 508 / 2e-180 Glutathione S-transferase family protein (.1) Lus10032711 [exp] 78 / 4e-17 ND / Lus10026012 [exp] 60 / 2e-11 AT5G45020 123 / 3e-39 Glutathione S-transferase family protein (.1.2) Lus10038943 [exp] 62 / 4e-11 AT5G44000 186 / 1e-55 Glutathione S-transferase family protein (.1) Lus10010599 [exp] 57 / 8e-10 ND / Lus10022528 [exp] 44 / 2e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121600 [exp] 160 / 3e-47 AT4G19880 600 / 0.0 Glutathione S-transferase family protein (.1.2.3) Potri.014G192300 [exp] 79 / 1e-16 AT5G44000 493 / 2e-174 Glutathione S-transferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005510 pacid=23177343 polypeptide=Lus10005510 locus=Lus10005510.g ID=Lus10005510.BGIv1.0 annot-version=v1.0 ATGAATGGCGAATGGGACGACCACTTGACTCCTTATTTTGGGAGGAGTTTTCAGCCGCTGTTCTACGTCAATTTGGCCCTACAACTTATAAAGGTTTGGG TTTTCCTCACCAAGTGTTCGATAAAAGTCCCTTTGATAAAATACATTCTCTACCCTATTCAGGTGCATCTCTTTGTGCTATGGGTTCAGTTGTTTCATTC TCAAAATTCTAGATGGGTGCTTGATATATGGGGTCATGGAGTGAAGAAATGGAAGTCTTGTTGTGATTATAGATTGGAAATTTGTTTAATTAGTGGCCGC TGTGATGTTGTTGTCAATGGGAGTACTGATTGTGCTCTTTACCAAGACCATCAGAAGGCATTAAGAAGTGCATTCTATATGTTTGATGAAATTCCTACGA GTCCTTATGAAGAGGCAACAAAAGAGTTTTATGAATCTCTGAACAAATGCAAGGCGATCCTCAGTAAGCAACGGTACATGCGCGGGAACACGCTGACTGA AATGGACATAAGATTACTTGATACGCTAATCAGATTCGACGAGGTGTATATTGTTCACTTCAAGTGCAACAAGAGGTGGTTGAGGGAGTACCCAAACTTG TTCAATTATACAAGGGATGTTTATCAGATCCCTTGGATGAGCTCTATAGTGAACATGGCGCACATCAAACGCCACAATTTTGGTAGCCATCCTTCCATCA ATGTATTTGGTTTATGTTTTGGATCTAAGGGGAGTAGTTTTTGTTGGTGTTGA
AA sequence Show only first row Show all	>Lus10005510 pacid=23177343 polypeptide=Lus10005510 locus=Lus10005510.g ID=Lus10005510.BGIv1.0 annot-version=v1.0 MNGEWDDHLTPYFGRSFQPLFYVNLALQLIKVWVFLTKCSIKVPLIKYILYPIQVHLFVLWVQLFHSQNSRWVLDIWGHGVKKWKSCCDYRLEICLISGR CDVVVNGSTDCALYQDHQKALRSAFYMFDEIPTSPYEEATKEFYESLNKCKAILSKQRYMRGNTLTEMDIRLLDTLIRFDEVYIVHFKCNKRWLREYPNL FNYTRDVYQIPWMSSIVNMAHIKRHNFGSHPSINVFGLCFGSKGSSFCWC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19880			Glutathione S-transferase fami...		Lus10005510 [exp]	0	1

Compare expression of checked genes

Lus10005510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.