Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007703 [exp] 182 / 6e-58 AT5G57820 47 / 8e-07 zinc ion binding (.1) Lus10024780 [exp] 107 / 2e-29 ND 40 / 2e-04 Lus10008249 [exp] 105 / 5e-28 ND 40 / 3e-04 Lus10025363 [exp] 102 / 5e-27 ND 39 / 0.002 Lus10029058 [exp] 103 / 7e-27 ND / Lus10018964 [exp] 100 / 3e-26 ND / Lus10007688 [exp] 100 / 5e-26 ND / Lus10039393 [exp] 100 / 2e-25 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006899 [exp] 97 / 2e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180600 [exp] 45 / 2e-05 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005511 pacid=23177347 polypeptide=Lus10005511 locus=Lus10005511.g ID=Lus10005511.BGIv1.0 annot-version=v1.0 ATGAGCGGGAAAGGACCATCTACCAAGAACCGTTCCAAGGTGAAAGATTGTTCTTCTTCTTCTTCTTCTTCAGGGACAAAGCTGAAGAAGGAAATTTCGA CGACTTCGGAAACTCCCGCGAAGAATGTGGTTCAATGTGGTGGTACAGGGGAAATGGTGAAGGTAGGAGGACGGCATAAGAAGAAGAGAGGAGGAGGTGG CAAGAAGCAGAAGGTGGTTGAATCTTGGAAATGGATTATGAATAATAATAACAATAATAATGATAATAATAGTAAGGCTTTCTCGCCGAGGCAACAACAG AAGAATAAAAAGAAGAAGAAGAACCCATGGCTGGATGTTGAACAAGGAATGGCTTATTATCTTAAGTGGGATGAAGGTTTGGTAGAAGAAACACAAGATT GGAAACTTGGACAGAACTGCTCCATATGTGGGAGAGATGTTTCATATGCACCACTCCCACCAGAGGCAGAGTCAGGGACTCACAATTTCCCAGAAGTTGC TTTCGGCTACGCGCAGATGATTCCTAGTCTTATCCCTGCCCTTGCCAGGGCAATTACGGCGGCTGAGCCTAATGTGTACCTGGTTGAGTGTGCTGACAGC ACAGATAGAGCATGGAGGGACGAGGACTGGTCCAGACTGATGCCACTTCAGTCTTTGTTTAGACGTGCCGACGATGTGATCGACGTCAATCCGTGA
AA sequence Show only first row Show all	>Lus10005511 pacid=23177347 polypeptide=Lus10005511 locus=Lus10005511.g ID=Lus10005511.BGIv1.0 annot-version=v1.0 MSGKGPSTKNRSKVKDCSSSSSSSGTKLKKEISTTSETPAKNVVQCGGTGEMVKVGGRHKKKRGGGGKKQKVVESWKWIMNNNNNNNDNNSKAFSPRQQQ KNKKKKKNPWLDVEQGMAYYLKWDEGLVEETQDWKLGQNCSICGRDVSYAPLPPEAESGTHNFPEVAFGYAQMIPSLIPALARAITAAEPNVYLVECADS TDRAWRDEDWSRLMPLQSLFRRADDVIDVNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005511 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	3.7	0.6915
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	7.3	0.6752
AT2G24960			unknown protein		Lus10025958 [exp]	9.0	0.6665
AT5G20140			SOUL heme-binding family prote...		Lus10035075 [exp]	14.7	0.5968
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007249 [exp]	15.1	0.6312
AT2G34050			unknown protein		Lus10007055 [exp]	17.9	0.5671
					Lus10019938 [exp]	21.2	0.6233
AT3G05260			NAD(P)-binding Rossmann-fold s...		Lus10021931 [exp]	29.6	0.5746
AT4G37030			unknown protein		Lus10001003 [exp]	32.9	0.5567
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	34.1	0.6072

Compare expression of checked genes

Lus10005511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.