Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012439 [exp] 139 / 3e-42 ND / Lus10004993 [exp] 70 / 2e-14 ND / Lus10022099 [exp] 42 / 5e-05 ND / Lus10021760 [exp] 41 / 0.0001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005512 pacid=23177345 polypeptide=Lus10005512 locus=Lus10005512.g ID=Lus10005512.BGIv1.0 annot-version=v1.0 ATGGACGGGGTACACAATAACAACAACAACATCCGTAACAACAACCCCAACAACAACCACAACGATAACCGCAACAATAACCACACCAACAATCACAATC ATGAGGATGGGCACCACAACAATAAGAATAATGAAAATTTTATTCTCATTCTTCACGAGAAGCGATTGATAGCTTATGGCCGTCCTACTCTCGGAGGAGC TGCTTCAAGCATTCAATCTCCAATCAGAGGAGATCAAGCTTATCAAACTCCAATGCCCCTAATTAACATCATTCAATCAAGGGCATTCTCTAGAGCACCG GGAGAAAACCCAAATGCTCATCTCAGCGATTTCGTTCATCTAGCTGAGACGAATAGAGCAAGAGGAGTAAATATTGATGAACTCAAGCTTAGCCTATTTG CATTTTCTCTAAAGGGGGATGCATTGGAATGGTTGTACGAGCATCAAGTACCTACCCACCACCCTTCAAAGAATGCGTAA
AA sequence Show only first row Show all	>Lus10005512 pacid=23177345 polypeptide=Lus10005512 locus=Lus10005512.g ID=Lus10005512.BGIv1.0 annot-version=v1.0 MDGVHNNNNNIRNNNPNNNHNDNRNNNHTNNHNHEDGHHNNKNNENFILILHEKRLIAYGRPTLGGAASSIQSPIRGDQAYQTPMPLINIIQSRAFSRAP GENPNAHLSDFVHLAETNRARGVNIDELKLSLFAFSLKGDALEWLYEHQVPTHHPSKNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005512 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	4.5	0.7503
AT1G26380			FAD-binding Berberine family p...		Lus10023374 [exp]	4.9	0.7014
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015865 [exp]	6.9	0.6399
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10020834 [exp]	11.2	0.6634
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10042977 [exp]	14.7	0.6784
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10007684 [exp]	20.3	0.5329
					Lus10001901 [exp]	31.3	0.6854
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	32.2	0.5819
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	34.1	0.6825
					Lus10031595 [exp]	43.3	0.6540

Compare expression of checked genes

Lus10005512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.