Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54650 207 / 3e-65 Methyltransferase family protein (.1.2) AT2G26200 73 / 4e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006576 [exp] 353 / 4e-122 AT1G54650 381 / 1e-133 Methyltransferase family protein (.1.2) Lus10024993 [exp] 60 / 1e-09 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044300 [exp] 241 / 3e-78 AT1G54650 376 / 2e-131 Methyltransferase family protein (.1.2) Potri.006G225600 [exp] 66 / 1e-11 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08242 [flax] [poplar] Methyltransf_12 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10005515 pacid=23158831 polypeptide=Lus10005515 locus=Lus10005515.g ID=Lus10005515.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAGCAGCAGCAGCGAAGCCTGAAGAAGCAGAGTACTTCTCCAACGACTTTGACTGGGAATCACTGAAACAAAAAGTTGAAACAAACCCTT CTTTTCAATTTCACTTGCGTCCTCATCTCCCTTCTTCGTTCCACAAAGAAGAAGCAGCAGAAACCAGAGATTCCAATGCCTGGCAGAGCTTCCACATCCG CCATTCCTCCGGCAAGTTCTTCAAGGAATTCCCTGAGCTGGTGGTCACTTCTTCAGAATCCACAGAACTTTTGGAGGTTGGTTGTGGAAATGGAAGCTCC GTTATCCCTATTTTGCGTGGCAACAAGAACATCAGTGTGTATGCTTGCGATTGTAGCAATGAGACTCTTGTTAGGGTTAAAGAGATGATTTTGGATGCTA GTCTGGCTTATGCCGTTGATCGTTTCATTCCATTCTTTTGTGATTTTTCTTCAACTGGATTCCCATATGGCTGGCTTGCAATTCCTGCAAGGGCATTGCC CATCAAACTCAAAAGAATTGCTCTTCAGGATCGATTTGAAGGCCGTTGCTGCGTTGGTGGAGTCGATTTCATTACCTTGATATTCACACTATCAGCAGTG CCGCTCAAACTGATGCCGAAAGCCATCAAGGAATGCTTTTCTGTTCTGAATCCTGGTGGTCTACTCTTGTTTAGAGACTACGGTCGAGCTCGATTACTGC TGCGTGAAGTCCGAGAATCGAAAAAGGGGGAAGACCATGCAGAGGGTGTGGGTTCATGGCAAGTTTCAGAAGCCAATGGTACAGAAAAGGTAGTTAGTTC CACATTTGCAAAATCATGGGAGTCTGTAAAAGAACAGCAGCAGAGTTTTGCCTTTCCACCTGGTTTGAGATTTTGTAAGGCAATAAAGACAGAGACATTA GAATCAGTAGCGTCCCATCAGCATATTACCAGGTGGCCATGCACATGTGTGATATGA
AA sequence Show only first row Show all	>Lus10005515 pacid=23158831 polypeptide=Lus10005515 locus=Lus10005515.g ID=Lus10005515.BGIv1.0 annot-version=v1.0 MAEAAAAAKPEEAEYFSNDFDWESLKQKVETNPSFQFHLRPHLPSSFHKEEAAETRDSNAWQSFHIRHSSGKFFKEFPELVVTSSESTELLEVGCGNGSS VIPILRGNKNISVYACDCSNETLVRVKEMILDASLAYAVDRFIPFFCDFSSTGFPYGWLAIPARALPIKLKRIALQDRFEGRCCVGGVDFITLIFTLSAV PLKLMPKAIKECFSVLNPGGLLLFRDYGRARLLLREVRESKKGEDHAEGVGSWQVSEANGTEKVVSSTFAKSWESVKEQQQSFAFPPGLRFCKAIKTETL ESVASHQHITRWPCTCVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	1.7	0.9239
AT1G09300			Metallopeptidase M24 family pr...		Lus10010905 [exp]	2.4	0.8940
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	3.5	0.9119
AT1G70350			unknown protein		Lus10013008 [exp]	3.5	0.8990
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10019623 [exp]	4.5	0.8942
					Lus10032802 [exp]	10.7	0.8763
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	11.0	0.8760
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	11.8	0.8935
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	14.7	0.8843
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	15.2	0.9103

Compare expression of checked genes

Lus10005515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.