Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 251 / 1e-81 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 206 / 5e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 203 / 7e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 202 / 1e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 196 / 3e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 159 / 1e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 140 / 9e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 111 / 3e-28 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 85 / 2e-18 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006575 [exp] 440 / 7e-157 AT1G52820 221 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 285 / 8e-95 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 248 / 4e-80 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 178 / 5e-54 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 171 / 2e-50 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 167 / 7e-49 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013130 [exp] 155 / 2e-44 AT1G52820 200 / 3e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005773 [exp] 154 / 1e-43 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005776 [exp] 151 / 6e-43 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176200 [exp] 308 / 6e-104 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 274 / 2e-90 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 273 / 3e-90 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 209 / 2e-65 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 204 / 1e-62 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 202 / 1e-62 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 202 / 2e-62 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 157 / 5e-45 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G146600 [exp] 107 / 9e-27 AT1G14130 366 / 6e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G455400 [exp] 107 / 1e-26 AT1G14130 376 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005516 pacid=23158832 polypeptide=Lus10005516 locus=Lus10005516.g ID=Lus10005516.BGIv1.0 annot-version=v1.0 ATGAATGCTCCTAGTTGTACTTCAAATTCTGTCACCATGGATTTCACTGAGAAACAACTTCTTCCAGTGATAGAATTCTCCATTGCCGACCTGAAACTAG CTACACCAGAATGGGAATCCCTGAGAACCCAAGTCCTTAATGCAGCTAAAGAGTATGGCTGCTTTGAGGCTGTGGTCAGGAAATTTCCTGACCAACTTCA ACAAGCCATGAACGAGTTGCTGGTTAAAGTGTTTGAGCTTCCTTTGGAGGCGAAGCAGAGAAATGTTTCTGAAAAGCCTTTCCATGGCTATTTTGCTTCC TCGTCTGTGAACCCTTGGTTCGAGAGCTTAGGGGTCGATGATTCTGGAAGCTTCGACAAGGTTAAAAGTCTGACAAACGCCCTGTGGCCAGAAGGACAAA AAAATATCAGGTTTAGTATTGTTTTTCCCTTGTGTTCTTGGAGTTGTTACATTCTGCTGAAGAAAATAATTACACAACTGAGTTTTTCACCGTTGGCAGC GGAACATTACAGTCGTTCTATCCAGGCGTCGAGATTAGATCAAGTGGTGAGGAGAATGATTCTGGAGGGTCTTGGAATTGATAAGTATACGGAAGAACAT ATGAACTCAAGTACATATACCTTGAGGATGATGAGATACGAAGCATCTGGAACCAGTGACAGAACAGTTAGGATGAAACCTCACACAGACAAGAACATTG TTAGCATTTTCCACCAGCACCAGGTTGATGGACTCGAACTTCAGGCCAAATCTGGCGAGTGGTTCGCCGCGAATTTCCAGCCTGATTGGTCTTTCCTAGT TGTAGTGGGGGGATCCTTCCATGCATGGACAAATGGTAGATTGTATTCTCCGGTTCATCGAGTCGTGATGACAGGAAACAATGCAAGGTACTCTGCTGGA TTGTTCTCAGTTCCAAGAGACGGGTACTTCGTAAAAGCTCCAGAGGAGATGCTGGACGATGAGAAGCATCCTTTGTTGTTTAGGCCTTTTGATTATTCCG AGTACCTGAAGCTCAGGTTTGCTGATGTTGGCAAAGAAGTTGTACCTTCACTCAAACACTACTTTGGTCTACCAAATTGA
AA sequence Show only first row Show all	>Lus10005516 pacid=23158832 polypeptide=Lus10005516 locus=Lus10005516.g ID=Lus10005516.BGIv1.0 annot-version=v1.0 MNAPSCTSNSVTMDFTEKQLLPVIEFSIADLKLATPEWESLRTQVLNAAKEYGCFEAVVRKFPDQLQQAMNELLVKVFELPLEAKQRNVSEKPFHGYFAS SSVNPWFESLGVDDSGSFDKVKSLTNALWPEGQKNIRFSIVFPLCSWSCYILLKKIITQLSFSPLAAEHYSRSIQASRLDQVVRRMILEGLGIDKYTEEH MNSSTYTLRMMRYEASGTSDRTVRMKPHTDKNIVSIFHQHQVDGLELQAKSGEWFAANFQPDWSFLVVVGGSFHAWTNGRLYSPVHRVVMTGNNARYSAG LFSVPRDGYFVKAPEEMLDDEKHPLLFRPFDYSEYLKLRFADVGKEVVPSLKHYFGLPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	0	1
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	2.0	0.9346
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	3.3	0.9388
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	7.3	0.8342
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10037110 [exp]	7.7	0.7440
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	8.2	0.8302
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	9.2	0.8302
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	10.1	0.8302
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	10.9	0.8302
					Lus10017294 [exp]	11.7	0.8302
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	12.4	0.8302

Compare expression of checked genes

Lus10005516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.