Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04580 934 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 761 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 521 / 1e-176 ERS2 ethylene response sensor 2 (.1) AT1G66340 458 / 5e-151 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 329 / 6e-103 ERS1 ethylene response sensor 1 (.1) AT5G35750 98 / 1e-20 AHK2 histidine kinase 2 (.1) AT1G27320 87 / 2e-17 AHK3 histidine kinase 3 (.1) AT2G01830 84 / 2e-16 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 65 / 2e-10 AHK1, ATHK1 histidine kinase 1 (.1) AT1G59940 56 / 2e-08 ARR3 response regulator 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006574 [exp] 1476 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 1231 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 1227 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022203 [exp] 858 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 855 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 854 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 853 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 433 / 2e-141 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 431 / 1e-140 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044100 [exp] 1090 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 1070 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.010G074300 [exp] 900 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 891 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 449 / 1e-147 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 446 / 3e-146 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 360 / 1e-114 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.003G171000 [exp] 86 / 6e-17 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 82 / 1e-15 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 79 / 7e-15 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10005517 pacid=23158837 polypeptide=Lus10005517 locus=Lus10005517.g ID=Lus10005517.BGIv1.0 annot-version=v1.0 ATGTCTAGAGCATTGGTTCTTGGATTGATATCCATCGCATTCATTTTGACCTCAGTAGTATCAGCTGAGGATAGTGAGTTTGTGAACTGTAACTGTGATG ACGAAAGCACCGGATTCTGGACTGTACACAACATTCTTGAGTGCCAGAGAGTGAGTGATTTCTTGATCTGTGCAGCTTATTTCTCAATCCCCATTGAACT ACTCTACTTCGTCAGCTGCTCCAACTTCCCTTTCAAATGGGTGTTCCTAGAGTTCATAGCGTTCATAGTCCTTTGCGGATTGACTCACTTGCTCAACGGG TGGACTTATTACGGTCCACACTCATTCCAGCTGATGCTTTCCTTGACAGTTGCAAAGTTCCTTACCGCTTTGGTTTCGTGCGCCACTTCCATAACCCTCC TCACTTTGTTCCCTCTCCTTCTCAAAGTGAAAGTGAGAGAGCTTTTCTTGAAGCAGAATGTTCTTGAGTTGGATCAAGAGGTTGGACTTATGAAGAAGAA GAAGCTGGCTAGCCTTCATGTCAGGATGTTAACAAGAGAGATTAGGAAGTCTCTTGACAAGCACAACATATTGTACACCACTCTCGTCGAACTCTCGAAA ACACTCGGTTTGTACAACTGTGCTGTGTGGATGCCTAATGAGAAGAGAACCGAGATGAACCTTACTCACGAGTTACGATCCAGTTCGAAAAACCATCATT TTTCTATCCCTGTCAATGACCGGGATGTGCTGGAGATTAAGGCCACCAAGGGGGTGAAGATTCTGAGGTCAGATTCAGCCCTTGGGAATGTAAGTTCTGG TGGTGATGGTGCTGAGGAATCTGGTGCTGTAGCTGCAATAAGGATGCCAATGCTTCGAGTTTCGGATTTCAAAGGTGGTACCCCGGAGTTCATAGATACT AGTTATGCTATCCTGGTTCTGGTTCTTCCAAGTGGAAGCTCGTGGTCTTACGAAGCGATGGAGATACTTGAAGTGGTTGCTGATCAGGTAGCGGTGGCAT TGTCCCATGCTGCGGTTCTCGAGGAATCTCAGCTGATGAGGGAGCAGCTGAGCGCGCAGAATCGGGCGTTGCAGCAGGCTAAGATGAATGCAATGATGGC TAGTCAGGCAAGGAACTCGTTTCAAAAGGTGATGAGTCATGGTATGAGGAGGCCGATGCATTCGATCATTGGATTGCTATCGATGTTCCAGGATGACAGC ATGAGCTTCGACCAGAAAATTGTTGGTGACACATTGATGAAAGCAAGTACTGTCCTTTCCACTTTGATTAATGATGCAATGGAGATTTCAGTTAAAGATA CAGGGAGGTTCCCACTAGAGATGAGGCCTTTTCGGCTACACTCGATGATCAAGGAAGCTTCTTGCCTAGCTAAGTGTTTGTGTGTGTATAAAGGCTTTGG CTTTGACATTGATGTTCAAAGCTCTTTGCCTGATTTAGTGGTAGGAGATGAACGGAGGGCTTTCCAAGTGATTTTGCATATGTTTGGTTACTTGCTGGAT CTGTATGATAATGGTAGGGGAACCATCATATTTCGGGTTTTCTTTGAGAGCGGTAGTAGTAGTGGAGGAAAGAATATGTGGAAAGCAAATATCTCTGATG GATATGCATCTATAAAGTTCGAGATCGAAATTAAAGATGAAAGTTCATCAAATGGCCCGATGTCAGCTGCTCAGAGGAGGCTAGCCGGTCCTGAGATTAA GGAAGGGCTTAGATTCAACATGTGCAAGAAGCTCGTTCAGATGATGCAAGGTAACATTTGGGTATCACCGAATGCATTCGGTTTCGTGAAAAGCATGAAT CTTGTTCTCCGGTTCGAAACCAGACAATCGATCGGTAGAGCAGCTGCATTCGCCCCCTCAGAACAACCAAATGCCACGCCTCCTCCTCAGTTCAAAGGCC TGAAGATAGTGCTGGCAGACGACGACAATGTAAATCGAACCGTGACAAAGAAGCTGCTGGAGAAACTAGGATGTGATGTCACTGCAGTCGCTTCGGGGTT CGAATGCCTCAGCACACTAAGCTCGGAGAACACTGTCAGAGTGCTGATACTGGACCTTCAGATGCCAGAGATGGATGGCTACGAAGTTGCGTCGAGAATT CGAAAGTTTCGGAGCAGGAACTGGCCGTTGATTATAGCTCTGACTGCTAGTGCAGAGGACAATGTATGGGAGAGATGCCTGCAGTTGGGAATGAATGGAG TGATCAGGAAACCAGTTCTGTTGCAAGTTATGGCTGATGAACTTCGTAGGGTTCTTCAGGTAGCTGGAAATAACTAG
AA sequence Show only first row Show all	>Lus10005517 pacid=23158837 polypeptide=Lus10005517 locus=Lus10005517.g ID=Lus10005517.BGIv1.0 annot-version=v1.0 MSRALVLGLISIAFILTSVVSAEDSEFVNCNCDDESTGFWTVHNILECQRVSDFLICAAYFSIPIELLYFVSCSNFPFKWVFLEFIAFIVLCGLTHLLNG WTYYGPHSFQLMLSLTVAKFLTALVSCATSITLLTLFPLLLKVKVRELFLKQNVLELDQEVGLMKKKKLASLHVRMLTREIRKSLDKHNILYTTLVELSK TLGLYNCAVWMPNEKRTEMNLTHELRSSSKNHHFSIPVNDRDVLEIKATKGVKILRSDSALGNVSSGGDGAEESGAVAAIRMPMLRVSDFKGGTPEFIDT SYAILVLVLPSGSSWSYEAMEILEVVADQVAVALSHAAVLEESQLMREQLSAQNRALQQAKMNAMMASQARNSFQKVMSHGMRRPMHSIIGLLSMFQDDS MSFDQKIVGDTLMKASTVLSTLINDAMEISVKDTGRFPLEMRPFRLHSMIKEASCLAKCLCVYKGFGFDIDVQSSLPDLVVGDERRAFQVILHMFGYLLD LYDNGRGTIIFRVFFESGSSSGGKNMWKANISDGYASIKFEIEIKDESSSNGPMSAAQRRLAGPEIKEGLRFNMCKKLVQMMQGNIWVSPNAFGFVKSMN LVLRFETRQSIGRAAAFAPSEQPNATPPPQFKGLKIVLADDDNVNRTVTKKLLEKLGCDVTAVASGFECLSTLSSENTVRVLILDLQMPEMDGYEVASRI RKFRSRNWPLIIALTASAEDNVWERCLQLGMNGVIRKPVLLQVMADELRRVLQVAGNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	0	1
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	8.1	0.6733
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	9.9	0.7362
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	18.8	0.6706
					Lus10031757 [exp]	21.1	0.6787
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	21.9	0.6981
AT5G16550			unknown protein		Lus10003850 [exp]	30.1	0.6754
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10042476 [exp]	34.0	0.5353
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	34.9	0.6592
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	35.7	0.6390
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	48.4	0.6098

Compare expression of checked genes

Lus10005517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.