Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04590 218 / 6e-67 AT-hook AT hook motif DNA-binding family protein (.1.2) AT4G12080 140 / 3e-38 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT2G45850 132 / 5e-35 AT-hook AT hook motif DNA-binding family protein (.1.2) AT2G33620 132 / 5e-35 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G25320 132 / 8e-35 AT-hook AT hook motif DNA-binding family protein (.1) AT5G28590 127 / 1e-34 AT-hook DNA-binding family protein (.1) AT5G51590 125 / 5e-32 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 123 / 3e-31 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 116 / 3e-29 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 115 / 7e-29 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006573 [exp] 356 / 1e-123 AT3G04590 181 / 1e-55 AT hook motif DNA-binding family protein (.1.2) Lus10015027 [exp] 138 / 4e-37 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 135 / 3e-36 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 135 / 8e-36 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 132 / 6e-35 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10040085 [exp] 132 / 1e-34 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 132 / 1e-34 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10030269 [exp] 129 / 7e-34 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 129 / 8e-34 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044000 [exp] 239 / 9e-76 AT3G04590 171 / 2e-49 AT hook motif DNA-binding family protein (.1.2) Potri.019G014200 [exp] 227 / 4e-71 AT3G04590 181 / 2e-53 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 141 / 4e-38 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 141 / 4e-38 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 138 / 4e-37 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.012G129500 [exp] 135 / 2e-36 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G148600 [exp] 135 / 2e-36 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 134 / 7e-36 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G082100 [exp] 132 / 4e-35 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.001G104900 [exp] 125 / 2e-32 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10005518 pacid=23158826 polypeptide=Lus10005518 locus=Lus10005518.g ID=Lus10005518.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAGGATACATCTCACCACCATCACCACCACCACCACTCTCTCACTTCCTACTACTCTTCAGCCACCGCTGCTCCTCCTTCCTCCGCCGCCG GCGGGGGAGGAGTACCTGCTAACAGCTCACAGAACAATGGTGTCCTACCTCCTCCCAACGGAGGAGGCTCCGAATCTGTTGGTGCAGGTTACCATATGGT GTACCCTCACTCCGTTGGGCCGTCGGCGGCTCCGGCGGATCCTGTGAGGAGGAAGAGAGGAAGGCCGAGGAAGTACGGGACTCCTGAACAGGCTTTGGCG GCGAAGAGGACTGCTGCTGCGGCTTCTTCTGCTTCTAGGGAGAAGAGCTCTCTCTCGTTTCCTGGCTTCAATAAGAAGTCTCAGCACTACTTGGCTACTC CTGGTAATACCGGGCAAGGCTTTACTCCACATATGATTTATGTTCGTCCTGGTGAGGATGTCGCTCTGAAAACCAACATGTTCATGCAACAAAGTAAGAG CGAGACATGTGTTTTGTCTGCATCCGGAGTCATCTCAAGTGCGACAATTCGTCAGCCCACAATGTCAGGGGGTAACTTGACTTACGAGGGTCGGTTTGAT ATCATTTCGCTCACTGGATCTTATATAAGGACTGAACTTGGAGGTAGAACTGGTGGGCTCAGTATCTGCATGTCTAATAATGATAACCAAATAATCGGGG GAGGTCTTAGTGGACCTCTAATCGCTGCCGGCGCTGTTCAGGTTATTGTTGGAACGTTCACACTCGATAACAAGAAGGATGCCGGTGACAGTGTTAGACT AGAGGCTTCTTCTCCCGGTAAGTTGCCGTCCCCAGTTGGAGGATCCTCCATGTCTAGTATTAGCTTCCGTTCTCCTGTGGAATCTTCGGGGAGGAATCCG GCTCATGCAAATGATGATCATCAAACGATGGCTGGAAGTCCTTTCATGATTCACAATCGGAGTATGCAAATGTCTTCCAGACCGATGGAATGGAGGACTG GTCCGGATCCTAGGACCGGCTCTGGCTATGACTTGACAGGTAATTCTTCTTGTTTTCTCCATATGAATGAAGAGCTGAGCGAGGTTTTGAAACCTGAGAT GTGGAATATTTCTTTTCCAGGAAGAACAGGTCCTGGAGGAGGGCACCGGTCCCCTGAAAACGGCAACTACGATCAACTTCCAGATTAG
AA sequence Show only first row Show all	>Lus10005518 pacid=23158826 polypeptide=Lus10005518 locus=Lus10005518.g ID=Lus10005518.BGIv1.0 annot-version=v1.0 MEQEDTSHHHHHHHHSLTSYYSSATAAPPSSAAGGGGVPANSSQNNGVLPPPNGGGSESVGAGYHMVYPHSVGPSAAPADPVRRKRGRPRKYGTPEQALA AKRTAAAASSASREKSSLSFPGFNKKSQHYLATPGNTGQGFTPHMIYVRPGEDVALKTNMFMQQSKSETCVLSASGVISSATIRQPTMSGGNLTYEGRFD IISLTGSYIRTELGGRTGGLSICMSNNDNQIIGGGLSGPLIAAGAVQVIVGTFTLDNKKDAGDSVRLEASSPGKLPSPVGGSSMSSISFRSPVESSGRNP AHANDDHQTMAGSPFMIHNRSMQMSSRPMEWRTGPDPRTGSGYDLTGNSSCFLHMNEELSEVLKPEMWNISFPGRTGPGGGHRSPENGNYDQLPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	0	1
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	2.4	0.9319
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	2.6	0.9444
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	6.7	0.8533
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	6.7	0.9234
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	7.7	0.9127
AT3G53630			unknown protein		Lus10024421 [exp]	8.8	0.9069
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	8.9	0.9121
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	9.4	0.9035
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	11.0	0.8992
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	11.4	0.8871

Compare expression of checked genes

Lus10005518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.