Plant FIBer expression Database

Lus10005520 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08750 580 / 0 Peptidase C13 family (.1.2.3)
AT2G25940 105 / 1e-24 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1)
AT4G32940 98 / 3e-22 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1)
AT1G62710 96 / 2e-21 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1)
AT3G20210 95 / 3e-21 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006570
[exp]
757 / 0 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3)
Lus10006571
[exp]
616 / 0 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
Lus10024446
[exp]
106 / 6e-25 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1)
Lus10007450
[exp]
105 / 1e-24 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1)
Lus10024599
[exp]
92 / 5e-20 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1)
Lus10032236
[exp]
91 / 1e-19 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1)
Lus10033344
[exp]
89 / 7e-19 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G014000
[exp]
630 / 0 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Potri.006G232900
[exp]
100 / 5e-23 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1)
Potri.018G059400
[exp]
96 / 2e-21 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1)
Potri.008G003400
[exp]
96 / 3e-21 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1)
Potri.003G113300
[exp]
88 / 1e-18 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1)
Potri.001G119800
[exp]
87 / 2e-18 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0093 Peptidase_CD PF01650 Peptidase_C13 Peptidase C13 family
Representative CDS sequence
>Lus10005520 pacid=23158827 polypeptide=Lus10005520 locus=Lus10005520.g ID=Lus10005520.BGIv1.0 annot-version=v1.0
ATGGCTGCTTCGTCCTCGTCGGCGGCGGCGGCAGCAGTGATTCTTGCCTCGATTTGGCTATGCAGTTCGTTCACTGCCGGTGTATCAAGTGAAACTACAA
TGCACACTAATAACTGGGCCGTCCTTGTCTGCACATCTCGCTTCTGGTTTAATTACAGGCACATGGCTAATACTTTGTCCTTGTATAGGACAGTTAAGCG
GCTAGGTATACCAGATGAAAGGATCATACTGATGTTGGCAGATGATATGGCTTGTAATGCTAGGAACAAGTACCCTGCCCAAGTTTTCAACAATGAGAAC
CACTGGCTCAATTTGTATGGCGATAATGTTGAGGTGGATTATCGAGGTTACGAAGTTACTGTGGAGAATTTTTTGCGGGTTCTCACAGGACGGCATGAGC
CTGCTGTTCCTAGGTCAAAGCGGCTCCTTAGTGATGAAGGGAGTCACATTCTTCTTTATATGACTGGGCATGGGGGTGATGAGTTCTTAAAATTCCAGGA
CTCGGAGGAGCTACAAAGTCATGATTTAGCTGATGCAGTGAAGCAAATGAAGGAAAAACATAGATTTAAGGAGTTGCTGATAATGGTGGACACTTGCCAA
GCTGCCACTCTTTTCAATCAGCTTCATTCACCTGGTGTACTAGCCATTGCAAGTAGCAAGAAAGGGGAGAATTCATACTCGCATCATTTGGACTCAGATG
TTGGTGTTTCTGTCGTTGATCGATTTACATTCTACACCCTTGCATTCTTTGAAAGATTGAATATGTATGACAATGCTTCACTGAGCAGGCTTTTCACCTC
GTATGATCCGAACTTGTTGATGTCTAACGCATTCTACAGAACAGATCTTTACCAACGGAACTTGCAGGAGGTTCCCGTGACAAACTTTTTCGGGTCCGTA
ATGGAAACAATACACACAGATTCTGCTTATAAGGCCTTTCCAGGAACCAATAATAGCACCAGTGAGACAGCTGAAGAGGATAAAAGAAGAGTACTGGTGG
ATGCAGATGTCCATGATCGAAGTAACAACAGAAAGCCAGAATGCCCCTTCACTAGAATGATGAGTGAACTTGAATCCAGAGTACAAAAGGTTGCCGATTT
CGATTCCATCGTGAATTACGGATTAGGGATGATGCTGCCGTTCCTGGCTGTATCAGTGTGGTTGTCAGCTTGA
AA sequence
>Lus10005520 pacid=23158827 polypeptide=Lus10005520 locus=Lus10005520.g ID=Lus10005520.BGIv1.0 annot-version=v1.0
MAASSSSAAAAAVILASIWLCSSFTAGVSSETTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNEN
HWLNLYGDNVEVDYRGYEVTVENFLRVLTGRHEPAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQ
AATLFNQLHSPGVLAIASSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSRLFTSYDPNLLMSNAFYRTDLYQRNLQEVPVTNFFGSV
METIHTDSAYKAFPGTNNSTSETAEEDKRRVLVDADVHDRSNNRKPECPFTRMMSELESRVQKVADFDSIVNYGLGMMLPFLAVSVWLSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G08750 Peptidase C13 family (.1.2.3) Lus10005520
[exp]
0 1
AT4G21060 Galactosyltransferase family p... Lus10036154
[exp]
2.4 0.8356
AT1G17820 Putative integral membrane pro... Lus10038326
[exp]
2.8 0.8163
AT2G26840 unknown protein Lus10036059
[exp]
3.5 0.8270
AT1G80420 ATXRCC1 BRCT domain-containing DNA rep... Lus10025764
[exp]
3.5 0.8288
AT1G48320 Thioesterase superfamily prote... Lus10043043
[exp]
3.9 0.7942
AT3G07330 ATCSLC6, ATCSLC... CELLULOSE-SYNTHASE LIKE C6, Ce... Lus10038217
[exp]
5.0 0.8246
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Lus10033990
[exp]
5.3 0.8167
AT1G47570 RING/U-box superfamily protein... Lus10020903
[exp]
6.9 0.7902
AT3G48425 DNAse I-like superfamily prote... Lus10043333
[exp]
7.7 0.8081
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Lus10043251
[exp]
10.1 0.8319

Lus10005520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.