Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54560 2622 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 2519 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G20490 2264 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 2097 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G04160 1919 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT5G43900 1911 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT2G31900 1887 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G28710 1875 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1677 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT4G33200 1627 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003315 [exp] 2274 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 2268 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 2185 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 2021 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1719 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1620 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 1526 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10014753 [exp] 1233 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043153 [exp] 1031 / 0 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043900 [exp] 2722 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 2706 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 2348 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 2343 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.002G254300 [exp] 2035 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.001G233100 [exp] 1982 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 1966 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1906 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 1667 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1425 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0010 [flax] [poplar] SH3 PF02736 [flax] [poplar] Myosin_N Myosin N-terminal SH3-like domain CL0010 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10005521 pacid=23158839 polypeptide=Lus10005521 locus=Lus10005521.g ID=Lus10005521.BGIv1.0 annot-version=v1.0 ATGGCTCATTGTTTCGATATTTCTCAATTCTGTAAATTACGCACTGATGTTAATGGAACTTCTGTGAATATAATTGAGGGTTCTCATGTCTGGTTCGAGG ACACAGACGAGGCTTGGCTGGCTGGCCTTGTACTCAAAATTACTGGACAGAATGTCGAGATAGAATGCCTCTCAAATGGGAAGAAGGTTACCCAAAATCT GTCCAAAATGTATCCTAAAGATATGGAAGCACCTGCTGGTGGAGTTGATGACATGACAAAGCTATCATATTTGCACGAGCCTGGAGTTCTACAGAATCTA AGAAGTCGATATGAATTAAACGAAATTTATACGTATACTGGAAACATACTTATTGCTATCAATCCTTTCCAAAGACTCCCCCACATCTACGATAGTCACA TGATGCAACAATATAAAGGAGCACCATTTGGGGAGCTAAGCCCTCATGTTTTTGCAGTTGCTGATGTTGCCTATAGAGCGATGATCAATGAAGGCAAAAG CAATTCCATCTTGGTCAGTGGTGAAAGTGGTGCCGGTAAAACTGAGACAACAAAAATGCTTATGAGGTACCTTGCGTATTTAGGTGGTCGTGTTGCTACG GAAGGACGGACAGTTGAACAACAAGTTCTTGAGTCAAATCCAGTCCTTGAAGCATTTGGAAATGCTAAAACTGTCCGAAACAATAACTCTAGTCGCTTTG GTAAATTTGTTGAGATTCAGTTTGATAAACATGGAAGAATCTCTGGAGCAGCAATTCGGACTTACCTCTTAGAGAGATCTCGTGTCTGCCAAGTTAACGA TCCTGAACGTAACTATCACTGCTTTTACCTTCTCTGTGCTGCACCACAGGAGGAGCTCGAGAAATACAAGTTGGACAATCCTAAAACATTTCACTATCTT AATCAGTCAAAATGTTTTGAACTGGTTGGTGTAAGTGATGCACATGATTATCTTGCCACAAGAAGGGCTATGGATATAGTCGGAATAAGTGCAAAGGAGC AGGAAGCAATTTTCAGAGTTGTAGCTTCAATTCTTCATCTCGGAAACATTGTGTTTACAAAGGGTAAAGAAGTTGATTCATCAGTTCCGAAAGATGACAA AGCCAAATTCCATCTTAAAACAACAGCAGAGTTACTCATGTGTGATCCAGTGGCTTTAGAAGATGCATTGTGCAAACGTGTCATGGTCACACCTGAGGAG GTTATTAAACGAAGTTTGGACCCACAAAGTGCAGCAATTAGTAGAGATGGTTTGGCTAAGACTATCTATTCTCGTTTGTTTGACTGGCTGGTGGACAAAA TTAACAATTCCATTGGACAAGATGCTACTTCGAAATGTCTAATTGGAGTTCTTGATATATATGGTTTTGAAAGCTTTAAGACCAACAGCTTTGAACAGTT CTGTATCAATTTCACAAACGAAAAGTTGCAGCAGCATTTCAACCAGCATGTTTTCAAAATGGAGCAAGAAGAATATACAAAAGAGCAAATCAATTGGAGC TACATTGAGTTTGTTGACAATCAAGATGTCCTGGATCTTATTGAAAAGAAACCAGGAGGAATTATTGCTCTTCTTGATGAAGCTTGTATGTTCCCAAAGT CAACACACGAAACCTTTTCAAATAAGCTCTACCAGACATTTAAAGTTCATAAGCGCTTTATCAAGCCAAAATTATCCCGCACAGATTTCACAATTGCTCA TTATGCTGGAGAGGTCCAATATCAATCTGACCAGTTCTTAGACAAAAACAAGGACTATGTGGTTGCTGAGCATCAAGAGCTATTGGGTGCTTCTGGATGT CAGTTTGTAGCAGGTCTTTTCCCTCCCCCTCCAGAAGCCACGAGTAAATCTTCAAAATTCTCTTCCATTGGTTCTCGGTTTAAGCTTCAACTTCAATCAC TGATGGAGACGTTGAACTCCACTGAACCACACTACATTAGATGTGTGAAGCCCAACAACCTACTAAAACCAGCCATATTCGAGAATGTCAACATCATGCA ACAACTCCGTTGTGGTGGTGTCCTCGAAGCAATTAGAATCAGTTGTGCTGGATACCCTACTAGGCGTCCTTTCTTTGAATTTATAAATCGATTTGGTCTT CTTGCTACCGAGGCTCTCGAAGGAAATTACGATGAAAAGGTTGCTTGCCAAAGAATCATGGAGAAGAAGGGTCTTAAAGGGTTTCAGATAGGTAAAACAA AGGTATTCCTAAGAGCTGGCCAGATGGCTGAATTGGACGCAAGGAGAGCTGAGGTACTCAACAATGCAGCAAGAATACTTCAGAGACGTGTACTGACTCA TGTCACTCGCAAACGCTTTATCGCAATGCGACAGGCAACAATATTCATACAAGCAATGTGTCGAGGACAACTGGCCAACAAAGTTTACTATGCGATGAAA CGGGAGGCAGCTGCAGTGAAAGTTCAAAAGCATGTACGCCGCTTTGAAGCTCGACAATCCTTCAAGACACTCTATGCATCTGCCATTCTTGTGCAAACGG GATTGAGGTCAATGGCAGCTCGTAAACAGTTCAGATTCAAGAAGCAAACCAAGGCAGCAATCTTTATGCAAACCCGGTGGCGTTGTCATAGAGCTGCTTT TTACTATAAGAGGCTCAAGAGAGGAGCAATAGTGTCTCAAACAAGATGGAGAGGAAGGCTCGCAAGGAGGGAGCTCAGGAAGCTCAAAATGGAAGCAAGG GAGACTGGTGCACTAAAAGAAGCCAAAAACAAGCTCGAAAAACAAGTAGAGGAACTCACCTGGCGCTTACAGTTGGAGAAGCGCATGAGGACTGATTTAG AAGAGGCTAAAGTACAAGAGACGACAAAATTTCAGTCTTCAGTAGAAGAACTACAAAAGAAACTAGAGGAAGCAAATGCATCTATAGCAAAGGAGCGTGA AGCTGCAAAGCAGGCTATTGAAGAAGCACCTCCAGTAGTCCAGGAAACCCAAGTGATGGTTCAAGATACTGGGAAAATTGAATCTTTGAATGCTGAAGTG GATAACCTAAAGGCCACGTTGGACACAGAGAAACAAAGAGCTGATGAAGCTGAGAAGAAGTTTAGTGAAGTTCAAGGGGCAAGTGAAGAAAGACGGAAAC AATTGGAAGAAACTGAGAAAAAGGTTCAGCAACTCCAAAGTTCCATGAAAACGCTAGAAGAGAAGCTTACCAACTTAGAGTCTGAAAATCAAGTTCTAAG GCAACAGGCTGTATCCATGGCGCCCAATAAGTTCCTTTCAGGACGCTCAAGGTCGATCATGCAGAGGACTGAAAGTCATATACCTCCAGAGGCAAAGGCA GGTTTGGATCTGCGTAGTCCTTCAATGATCCAAAGGGAGGAAGCAGATGACAGACCTCAAAAGTCACTGAATGAGAAGCAACAGGAGAACCAGGAATTGC TCATTCGGTGTATAGCACAACACCTTGGATTTCAAGGAAAAAGACCTATCGCAGCTTGTATTATATATAAATGCCTGCTGCAGTGGAGATCCTTTGAAGT TGAGAGGACAAGTGTTTTTGACCGCATCATTCAGACCATAGGCCATGCTATTGAGACTCAAGATAACAATGATGTCTTAGCCTACTGGTTGTCGAATGCC TCAACGCTATTATTACTACTCCAGCGCACCCTGAAAGCAAGTGGTGCAGCAGGAATGGCTCCACAACGTCGTAGATCGTCATCTGCCACTTTGTTTGGAA GAATGACACAGAGTTTCCGTGGTGCTCCGCAAGGAGTCAATCTTTCCCTCATTAACGGCACTATAAGTGGCGGAGTGGACACTTTGCGGCAAGTTGAAGC CAAGTACCCAGCGTTGCTTTTCAAACAGCAACTCACAGCCTATGTAGAAAAGATTTATGGAATGATAAGAGATAATCTAAAGAAAGAGATATCTCCATTG CTTGGATTATGCATCCAGGCACCTCGAACATCCCGAGCAAGCTTAGTCAAAGGAGCACGTTCAGTGGCTAATACTGCAGCACAACAAGCCTTAATTGCTC ACTGGCAAGGGATAGTGAAGAGCCTTGGAAACTTCCTTAACACTCTGAAAGCAAATCATGTACCTCCATTTTTGGTTCGCAAGGTGTTCACACAAATATT TTCATTCATCAATGTCCAGCTATTTAACAGTCTTCTGCTAAGGCGAGAATGTTGCTCCTTTAGCAATGGTGAATATGTAAAAGCTGGATTAGCTGAGTTG GAACATTGGTGTTACAAAGCAACAGATGAGTATGCAGGTTCAGCATGGGATGAACTAAAGCATATTAGGCAAGCAATTGGGTTTCTGGTCATACATCAAA AGCCAAAGAAAACATTAGATGAAATTAGTCATGACTTGTGCCCTGTTCTTAGCATTCAACAATTGTACAGGATAAGTACTATGTACTGGGATGACAAGTA TGGGACGCATAGTGTATCATCGGATGTTATATCTAATATGAGAGTATTGATGACTGAAGATTCAAACAATGCAGTCAGTAACTCTTTCTTGTTAGACGAT GATTCAAGCATTCCATTTTCAGTGGACGATTTATCGAAATCGATGGAGCAAATTGACATTTCCGACATCGAACCGCCACCTCTGGTTCGTGAGAATTCGG GATTTAGTTTCTTGCTGCCCCGTACTGACTAA
AA sequence Show only first row Show all	>Lus10005521 pacid=23158839 polypeptide=Lus10005521 locus=Lus10005521.g ID=Lus10005521.BGIv1.0 annot-version=v1.0 MAHCFDISQFCKLRTDVNGTSVNIIEGSHVWFEDTDEAWLAGLVLKITGQNVEIECLSNGKKVTQNLSKMYPKDMEAPAGGVDDMTKLSYLHEPGVLQNL RSRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRVAT EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEELEKYKLDNPKTFHYL NQSKCFELVGVSDAHDYLATRRAMDIVGISAKEQEAIFRVVASILHLGNIVFTKGKEVDSSVPKDDKAKFHLKTTAELLMCDPVALEDALCKRVMVTPEE VIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINNSIGQDATSKCLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWS YIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKVHKRFIKPKLSRTDFTIAHYAGEVQYQSDQFLDKNKDYVVAEHQELLGASGC QFVAGLFPPPPEATSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRPFFEFINRFGL LATEALEGNYDEKVACQRIMEKKGLKGFQIGKTKVFLRAGQMAELDARRAEVLNNAARILQRRVLTHVTRKRFIAMRQATIFIQAMCRGQLANKVYYAMK REAAAVKVQKHVRRFEARQSFKTLYASAILVQTGLRSMAARKQFRFKKQTKAAIFMQTRWRCHRAAFYYKRLKRGAIVSQTRWRGRLARRELRKLKMEAR ETGALKEAKNKLEKQVEELTWRLQLEKRMRTDLEEAKVQETTKFQSSVEELQKKLEEANASIAKEREAAKQAIEEAPPVVQETQVMVQDTGKIESLNAEV DNLKATLDTEKQRADEAEKKFSEVQGASEERRKQLEETEKKVQQLQSSMKTLEEKLTNLESENQVLRQQAVSMAPNKFLSGRSRSIMQRTESHIPPEAKA GLDLRSPSMIQREEADDRPQKSLNEKQQENQELLIRCIAQHLGFQGKRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNA STLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLINGTISGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPL LGLCIQAPRTSRASLVKGARSVANTAAQQALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAEL EHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDD DSSIPFSVDDLSKSMEQIDISDIEPPPLVRENSGFSFLLPRTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	0	1
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	2.4	0.9127
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10038820 [exp]	4.5	0.8755
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	4.5	0.9128
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10022861 [exp]	5.2	0.8899
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10033820 [exp]	6.2	0.8836
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	7.5	0.9112
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	8.0	0.8806
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	8.1	0.9005
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	9.4	0.9067
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	9.5	0.8769

Compare expression of checked genes

Lus10005521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.