Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006569 [exp] 239 / 8e-82 ND 44 / 1e-05 Lus10022005 [exp] 72 / 2e-16 AT3G56710 48 / 1e-07 sigma factor binding protein 1 (.1) Lus10039494 [exp] 46 / 1e-06 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10024139 [exp] 46 / 2e-06 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10039493 [exp] 45 / 5e-06 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10008659 [exp] 38 / 0.0007 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043800 [exp] 61 / 2e-12 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G093900 [exp] 61 / 2e-12 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.019G013750 [exp] 59 / 2e-11 AT3G56710 46 / 7e-07 sigma factor binding protein 1 (.1) Potri.019G013300 [exp] 58 / 3e-11 AT2G41180 47 / 3e-07 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.001G029700 [exp] 49 / 1e-07 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.003G194700 [exp] 47 / 7e-07 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1) Potri.006G038900 [exp] 44 / 9e-06 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G036600 [exp] 38 / 0.0008 AT3G56710 48 / 2e-07 sigma factor binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10005523 pacid=23158825 polypeptide=Lus10005523 locus=Lus10005523.g ID=Lus10005523.BGIv1.0 annot-version=v1.0 ATGGGTAAGTTGAGAAACTCCGATTATGATGATCAAGTTCTTAACTTTCCGACTATCAAGAAGAAGCAGAAACAGAGGATGAAGAAGAAGGAGCCGATGA AGATTACGTACATCTCCAGTCCGACGCTGGTCAAAGCCACAAGTGCTTCCGAGTTCCGTGCTCTGGTTCAAGAGCTCACCGGGAAAGATTCTCGAGTCGG GGAAGATGAGAATTATGATTACTGTTCTCCGGTGACTTCCGGCGGCGGTGGAAGCTCCGTGGAAGAGAATTATGATCAGGTGACGTGTACGAGTGGGGTT GATGATCAGCTGGATTATAATGACTATTTTTTCGCGGCGCCGGAGGATGGGTATTTGTCGAACAGTACTGGTGATGTTGTTACGGCGGCGGTGGAGGAGG AAACGGCGGCGTCGTATTCGACGGTGGAGATGGAGGAAGGGGGGTTTTCATTGTGGAGAGATGTTCCTGATGGGTTTGGGAATGTGGGAGGGCTTAATCA ATACTCTCTTAATTGTGTCTTTGTATAA
AA sequence Show only first row Show all	>Lus10005523 pacid=23158825 polypeptide=Lus10005523 locus=Lus10005523.g ID=Lus10005523.BGIv1.0 annot-version=v1.0 MGKLRNSDYDDQVLNFPTIKKKQKQRMKKKEPMKITYISSPTLVKATSASEFRALVQELTGKDSRVGEDENYDYCSPVTSGGGGSSVEENYDQVTCTSGV DDQLDYNDYFFAAPEDGYLSNSTGDVVTAAVEEETAASYSTVEMEEGGFSLWRDVPDGFGNVGGLNQYSLNCVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005523 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	1.0	0.8747
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	4.9	0.8135
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	6.3	0.8290
AT2G15760			Protein of unknown function (D...		Lus10012069 [exp]	7.5	0.7774
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	7.5	0.8291
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	7.7	0.8151
					Lus10006569 [exp]	10.2	0.7883
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	10.7	0.7843
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	12.7	0.8152
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	15.4	0.8253

Compare expression of checked genes

Lus10005523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.