Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28640 128 / 3e-37 ATGIF1, GIF1, AN3 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) AT4G00850 84 / 7e-20 GIF3 GRF1-interacting factor 3 (.1) AT1G01160 74 / 3e-16 GIF2 GRF1-interacting factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006568 [exp] 227 / 2e-75 AT5G28640 145 / 4e-43 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10032892 [exp] 86 / 1e-20 AT4G00850 185 / 3e-59 GRF1-interacting factor 3 (.1) Lus10027132 [exp] 84 / 1e-20 AT4G00850 148 / 7e-46 GRF1-interacting factor 3 (.1) Lus10008847 [exp] 38 / 0.0004 AT1G01160 66 / 2e-15 GRF1-interacting factor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013100 [exp] 155 / 1e-47 AT5G28640 135 / 1e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.013G043700 [exp] 148 / 9e-45 AT5G28640 134 / 4e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.014G103900 [exp] 84 / 3e-20 AT4G00850 132 / 3e-38 GRF1-interacting factor 3 (.1) Potri.002G177600 [exp] 81 / 1e-18 AT4G00850 152 / 4e-46 GRF1-interacting factor 3 (.1) Potri.012G023100 [exp] 71 / 7e-16 AT4G00850 90 / 6e-23 GRF1-interacting factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05030 [flax] [poplar] SSXT SSXT protein (N-terminal region)
Representative CDS sequence Show only first row Show all	>Lus10005524 pacid=23158833 polypeptide=Lus10005524 locus=Lus10005524.g ID=Lus10005524.BGIv1.0 annot-version=v1.0 ATGTTTCTTCCCTCTGTACTTCAGTATCTAGATGAGAATAAGTCTTTGATCTTGAAGATCGTTGAGAGTCAGAACTCAGGAAAACTCAGTGAGTGTGCAG AGAACCAAGCGAGGCTTCAGCGTAACCTTATGTACTTGGCCGCGATTGCTGATTCTCAACCTCAACCACCAGCTCTGCACTCTCAGTACCAATCAAGTGG AATGGTGCAGCCAGGGATGCACTATATGCAGCAACAGCAGATGACACAGCAGTCCCTGATGGCAGCCAGGTCATCAATGATGTACAGTCAGCAGCCATAC GCAGCCCTCCAGCAGCAGGCTGCCATGAACAGCCAGCTGGGGATGAGTGGAGGAGGTGGAGGAGGAAGTACATCAGGGCTCCACATGCTACAGAGCGATT CGAGCGGTGGGGGAGGAGGGAGCAGTGGTGGACACCTTGGCTTTCCAGACTTCAGCAGCAGGGATGGCAGGGGAATGGGGAGCAGCAAGCAAGAGATGGG GAGCGGTGGAGGTTCGAGTGATGCTCGAGGAGGGAGCTCCGGTGGTGGCGGAGATGGTGGGGAGACTCTTTACTTGAAATCCAATGATGATGGGAACTAG
AA sequence Show only first row Show all	>Lus10005524 pacid=23158833 polypeptide=Lus10005524 locus=Lus10005524.g ID=Lus10005524.BGIv1.0 annot-version=v1.0 MFLPSVLQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPALHSQYQSSGMVQPGMHYMQQQQMTQQSLMAARSSMMYSQQPY AALQQQAAMNSQLGMSGGGGGGSTSGLHMLQSDSSGGGGGSSGGHLGFPDFSSRDGRGMGSSKQEMGSGGGSSDARGGSSGGGGDGGETLYLKSNDDGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10005524 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	2.8	0.9700
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	3.7	0.9781
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	5.0	0.9531
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	5.8	0.9752
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10006568 [exp]	6.4	0.9456
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	8.1	0.9631
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	10.4	0.9724
AT5G41685			Mitochondrial outer membrane t...		Lus10007843 [exp]	11.0	0.9557
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	12.0	0.9653
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	13.0	0.9601

Compare expression of checked genes

Lus10005524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.