Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37690 270 / 4e-84 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) AT2G05140 92 / 7e-22 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042546 [exp] 321 / 1e-103 AT2G37690 907 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10022004 [exp] 312 / 3e-100 AT2G37690 892 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012300 [exp] 311 / 4e-100 AT2G37690 885 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Potri.013G043500 [exp] 307 / 2e-98 AT2G37690 867 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0224 [flax] [poplar] DHQS PF00731 [flax] [poplar] AIRC AIR carboxylase CL0179 [flax] [poplar] ATP-grasp PF02222 [flax] [poplar] ATP-grasp ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10005526 pacid=23158840 polypeptide=Lus10005526 locus=Lus10005526.g ID=Lus10005526.BGIv1.0 annot-version=v1.0 ATGCTGCAACGCCTTCTTACACCACCAGCTTCGGATTTCTGCTCCCTCAAGCCATGCTTCTATCCTTCTGGCACCTCTCATTCCTTTCCCATCAACAAGA ACCTTCACCACCCTCCATCCTCTTCTTCCTTGTCGCTGCAGAAGCAGTCACAAGGTTTTCAAAATCAAGTCGTGGTGTGTCCAGCTTCATCGTCCCAACA CAATAGAGTTCCTTCTACAGAGAGCGATGAATTATTGGAGCCTGTTCATGGAGTATGCGAGACGGTGGTGGGAGTTTTAGGAGGAGGGCAATTAGGGCGG ATGCTCTGCCAATCTGGCTCAGAGATGGGCATCAAAGTTTTAGTCTTGGACCCTCTTGTGGGCTGCCCTCCTAGTTCCATCGCCCATCACCATATGGTTG GCAGCTTTGATGATAGTGCCACTGTTGAAGATTTCGCGAAGAGATGTGGAGTGTTGACTGTTGAAATTGAGCATGTTGATGTTGCTACATTGGAGAGGCT TGGGCAGCAAGGAGTTGATTGCCAACCGAAAGCCTCTACTATTCGAACCATACAAGACAAATATCTGCAGAAGGTTCATTTTGCCCGACATGGAATTCCA CTTCCGAAGTTTATTCAGATTCTGCTAAATGAAGTAGCTCCAAGACCTCATAATAGTGGCCATCACACTTTTGAGGCTTGCTATACCTCACAGTATGAAC AACATTTACAGGCTGTTTTAGGACTTCCTTTGGGCGATCCATCAATGAAGACTCCAGCTGCAATGATGTACAATCTACTAGGTGAAGAGGAGGGAGATCA AGGTTTTCATTTGGCTCATCAGCTGATTGGGAAGGCATTGACTGTAGCAGGAACTAATGTTCCTGAGATGCGAAAGCAACGCAAAATGGGTCATGTAACT ATCGTTGGCCCTTCTATGGGCATAGTAGAAGTGCGGATGAATTCAATGCTGGAGGAGCAAGGATCTGATACTCCATCTACGGATGTTCCTTGTGTTGGGA TAATTATGGGCTCTGATTCAGATCTTCCTGTAATGAAGGATGCTGCCAGAATCTTAACCATGTTTGGTGTTCCGCACGAGGGATGGTGGCTTCTCTTACC CTACTGCCAGTTATCGGTGTCCCAGTTCGTTCTTCTTCACTCGACGGGGATGGATTCACTTTTATCAATAGTGCAGATGCCGAGAGGTGTACCGGTTGCA ACTGTGGCGATAAACAACGCTATGAATGCAGGCCTTCTGGCAGTTAGAATTGTGGGGGCTGGTGATCCTGATCTATTAGCCAGATTATTAGACATTAGAT GA
AA sequence Show only first row Show all	>Lus10005526 pacid=23158840 polypeptide=Lus10005526 locus=Lus10005526.g ID=Lus10005526.BGIv1.0 annot-version=v1.0 MLQRLLTPPASDFCSLKPCFYPSGTSHSFPINKNLHHPPSSSSLSLQKQSQGFQNQVVVCPASSSQHNRVPSTESDELLEPVHGVCETVVGVLGGGQLGR MLCQSGSEMGIKVLVLDPLVGCPPSSIAHHHMVGSFDDSATVEDFAKRCGVLTVEIEHVDVATLERLGQQGVDCQPKASTIRTIQDKYLQKVHFARHGIP LPKFIQILLNEVAPRPHNSGHHTFEACYTSQYEQHLQAVLGLPLGDPSMKTPAAMMYNLLGEEEGDQGFHLAHQLIGKALTVAGTNVPEMRKQRKMGHVT IVGPSMGIVEVRMNSMLEEQGSDTPSTDVPCVGIIMGSDSDLPVMKDAARILTMFGVPHEGWWLLLPYCQLSVSQFVLLHSTGMDSLLSIVQMPRGVPVA TVAINNAMNAGLLAVRIVGAGDPDLLARLLDIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	0	1
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	5.4	0.8450
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	6.0	0.8442
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	6.6	0.8111
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	9.8	0.8130
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	12.0	0.7478
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	13.8	0.7991
AT4G39380			unknown protein		Lus10033530 [exp]	15.7	0.8057
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	16.4	0.7630
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	18.3	0.7769
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	18.6	0.7720

Compare expression of checked genes

Lus10005526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.