Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08800 175 / 8e-45 Protein of unknown function, DUF593 (.1.2) AT2G30690 125 / 2e-29 Protein of unknown function, DUF593 (.1) AT1G74830 96 / 3e-20 Protein of unknown function, DUF593 (.1) AT1G18990 92 / 3e-19 Protein of unknown function, DUF593 (.1) AT5G16720 74 / 4e-13 Protein of unknown function, DUF593 (.1) AT1G70750 68 / 2e-11 Protein of unknown function, DUF593 (.1) AT5G06560 45 / 0.0002 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006566 [exp] 1383 / 0 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 134 / 3e-32 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 134 / 3e-32 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10018782 [exp] 129 / 3e-30 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10024869 [exp] 126 / 1e-29 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10033123 [exp] 85 / 1e-16 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 84 / 2e-16 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 77 / 4e-14 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 71 / 4e-12 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012200 [exp] 278 / 3e-80 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 241 / 5e-67 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 232 / 1e-65 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 139 / 1e-33 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 137 / 4e-33 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 103 / 2e-22 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 92 / 5e-19 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 86 / 8e-17 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 81 / 2e-15 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 78 / 2e-14 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10005527 pacid=23158838 polypeptide=Lus10005527 locus=Lus10005527.g ID=Lus10005527.BGIv1.0 annot-version=v1.0 ATGGGAAGCAAGGCGGTTTCGTTGAGTAGGAAGAAACTTGATATCAGATCTGTGTTGGCATCTGCTGTTCTCGAATGGCTCCTGATTCTAATGCTCCTTG TTAATGCTATATTCTCTTACTTGATATCCACGTTTGCTCATTACTGCGGGTTGCAAGCTCCGTGTCCGCTCTGCTCTAGGCTCGATCACATTTTGGGTTC GAGGAAGTTGAAGCACTACTGGGATCTAGTCTGCCGCAACCATAAGCTGGAAATCTCTTCCTTGGTCCTTTGTCATGCTCACGACACTCTCGTAGATGTT CACGGAATGTGTGAACCCTGCCTCTTCTCGTTTGCCACGACCAACAAGTCCAATGCTGAGACTTACAGGTTGCTGGTGGGCAAGCTGGGTGAAGATTCTG GATTCTCTGGTCAAAATTCGAAGGCGAGGAAATGTTCTTGTTGCAATGAGCCATGTGCATCAAAAGGGGCAGGCGAGAAGTTGATGAAGTTTCAATCAAC GGGCTCCGAGGCTAGTGATGCTGATGTCCCTTTATTCGCTGCTGTCGAACATGACCAGGAATCCCCCAAGAGCAGTTGCATTATCGAGAAGAGCCGCGAG GTTGATCCTCTAGCTCGTGTAGAGGTCAATGCTGAATATAAAGCACATGGTTTGGTTCAGGGGGGAATCAGTGGTTTGGATCATGAATCCCATCCATTTG TCGCAGACAATTCTGTTGAATATGTGCCATTGGTGCTCCATCTTAGCAGTATACATGAACATTCCACTTTGGATGATCCTCTAGCTCACGTTGGGTATAC CGAGGTCGATGCAGATTCTGATGCTGAATACGAATCCCGCGGTTCAGTGCAGGAGGTTGGTATTAGCGGTTTGGTTCACGAAACTCATCCATTGATAGCA GATGATTCTATTGAACATGAACCAACTTTGGAGCCCCTAACTCATGTTGGGTATATTGGAGTGAAGGTTGATTCTGATGCTGAATCTGAAGACCGGATGT CTAACGAGGAAGATGACGCAAATGTCGCAGCTCATGAAACCCATCCATTAATGGAGGCAAATGTCTCTGCTGAATGTGTGTCAAGGGAGGCATTTGCAGT TCGTCCGTCTGAAGATTCTACCTTTTTCGATCCTCCAGCTGATGTTGGGTATGCTCAGGTCAAGACTTTTTCTGTTGTCGAATCTGAAGACCAGGCTTCT TATGATGGGGATGATGCAGATGCCTCGCCTCATGAAACTCATCCAGTAATGGAGAATGTTGCTCTTGAACACATTCCATCAAAGCCGGATATTGTCGTTC TAAATGAAGGTGACACGGCAAGGAACTTAATGGACCAAGTTATGGAAACTGAGCCTTCTCATTATCTCGAAGAACTCAATTGGCAACGAGCTGAGAAGAC CGAGCCCTCTGCAGATCCTGAGCTGATTCCCTTTTATGACGATCTTTCTCCATCTGTTGCTAGTGTAATGCCGGAAGAAGAAGAGGGGGATAAGTTCATT TCCTCAGACGATGTGCCACCAGAGTCAAATGAAAGAGAAATCGTCGTTGAAACATCATCCAAAGAGAGAAGCTCGATTTCATTAGACAATGTGGCTTCCC CGTTGGATTCCATAGAGACCGTTGTGGAAGCATTACAAAAGAGCAAGCTTGTCTCCATAGATAATGAGTCTCCGGCATTAGATACAACGGATTGCGACAC AAGAAAAGAGGATATTTGGGAACCAGTTTCAGAAACATATTCCGAAACAAATCATGTTTCAAGTGAGATCAATAGCCCACACTGGCATAACTCATTGGAT CTTGGTGATGCCTACAAGCTAGCTGTTGGAAATAAGGGAAGGCATCATCTTTCTGGTGTGCTTTCGGAACAATGGCTTGGCAAGGATTCTTCAAGACTGA GTGAAGATCTGCGGAATTTGGCCTCGCATCTATCTGGTGTTGGCGAGCAGTCATTAAGTCCTAGAGTGCCAATGAGTCCCAGAGTACCACCCATGAGTCC TAAACTGTCCATAAACAACGATGATACTTCGACCACCACTGCCGGAGTGAAAATGCTGCAGAAGAGAATGTCGCTCGAGAGAAACGAGTCCGGTCTATCT CTCGATGGAAGCCTCGTCAGCGAAATCGAAGGCGAGAGTTTGGTAGACAGGCTGAAACGACAGGTTGATCACGACAAGAAACTGTTGAATATCCTGTACA AGGAGCTGGAGGAAGAGAGGAACGCTTCGGCCATTGCAGCGAATCAGGCCATGGCTATGATCACTAGACTGCAGGAAGAGAAGGCATCTTTCCGAATGGA AGCCCAGCAGTGCCTGAGGGTGATGGAGGATCAAGCCGAGTACGACATGGAAGCGTTGCAGAAGATGAACGACCTTCTCGTGGAGAAGGAGAAAGAGATT CAAGAGCTCGAAGCTGAGCTCGAGTTCTACAGGAATGCATTCCACCTGGATGTCGAAAATGCAATGGATCGAGTCGAAGTTTCCAAGTTTGAAGAGCGAG ATGGGCATATAAGTTTGAGTGAAGTGAACAAGTCAATGTCCGAGCTTGAAGATGCAAAATGGTAA
AA sequence Show only first row Show all	>Lus10005527 pacid=23158838 polypeptide=Lus10005527 locus=Lus10005527.g ID=Lus10005527.BGIv1.0 annot-version=v1.0 MGSKAVSLSRKKLDIRSVLASAVLEWLLILMLLVNAIFSYLISTFAHYCGLQAPCPLCSRLDHILGSRKLKHYWDLVCRNHKLEISSLVLCHAHDTLVDV HGMCEPCLFSFATTNKSNAETYRLLVGKLGEDSGFSGQNSKARKCSCCNEPCASKGAGEKLMKFQSTGSEASDADVPLFAAVEHDQESPKSSCIIEKSRE VDPLARVEVNAEYKAHGLVQGGISGLDHESHPFVADNSVEYVPLVLHLSSIHEHSTLDDPLAHVGYTEVDADSDAEYESRGSVQEVGISGLVHETHPLIA DDSIEHEPTLEPLTHVGYIGVKVDSDAESEDRMSNEEDDANVAAHETHPLMEANVSAECVSREAFAVRPSEDSTFFDPPADVGYAQVKTFSVVESEDQAS YDGDDADASPHETHPVMENVALEHIPSKPDIVVLNEGDTARNLMDQVMETEPSHYLEELNWQRAEKTEPSADPELIPFYDDLSPSVASVMPEEEEGDKFI SSDDVPPESNEREIVVETSSKERSSISLDNVASPLDSIETVVEALQKSKLVSIDNESPALDTTDCDTRKEDIWEPVSETYSETNHVSSEINSPHWHNSLD LGDAYKLAVGNKGRHHLSGVLSEQWLGKDSSRLSEDLRNLASHLSGVGEQSLSPRVPMSPRVPPMSPKLSINNDDTSTTTAGVKMLQKRMSLERNESGLS LDGSLVSEIEGESLVDRLKRQVDHDKKLLNILYKELEEERNASAIAANQAMAMITRLQEEKASFRMEAQQCLRVMEDQAEYDMEALQKMNDLLVEKEKEI QELEAELEFYRNAFHLDVENAMDRVEVSKFEERDGHISLSEVNKSMSELEDAKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08800			Protein of unknown function, D...		Lus10005527 [exp]	0	1
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	6.1	0.8239
AT5G18610			Protein kinase superfamily pro...		Lus10023473 [exp]	11.0	0.8022
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	25.0	0.7914
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	26.1	0.7614
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	27.8	0.8018
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	29.1	0.7975
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	34.6	0.7864
AT1G31940			unknown protein		Lus10012117 [exp]	34.8	0.7946
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	42.4	0.7700
AT3G14910			unknown protein		Lus10011169 [exp]	50.9	0.7801

Compare expression of checked genes

Lus10005527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.