Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005528 pacid=23158842 polypeptide=Lus10005528 locus=Lus10005528.g ID=Lus10005528.BGIv1.0 annot-version=v1.0 ATGGCTGACCATGAAGTGATACTAGATCAGAATGAAGAACTGGTATTGGAAGGTACTGATGGTCTGGATTTGGGTCAAGGAGGACATGAACATCACCTTG ATCTGGGACAATCTCATGATCATGAACTGGGTTTAAGGCATCATCCACTCGACCATCACGGCTCGGGATTGGGGCAGGATCTTGAAAACGAAGCAACCTC TGGTGACAGCAATGGACGTGAAAACGAGTCAGGAGGCATTGACGAAAATGCTGAGCCAATTGGTCGCGCGGTGAAATTCTTCCCACAGCGTAATGGATTC GTCGTTTTGTATGAGAACGACGATTTGTCTCTTTCTGCTTATGGCGCCAATGGGAAATTGATGGGTACATTGTAA
AA sequence Show only first row Show all	>Lus10005528 pacid=23158842 polypeptide=Lus10005528 locus=Lus10005528.g ID=Lus10005528.BGIv1.0 annot-version=v1.0 MADHEVILDQNEELVLEGTDGLDLGQGGHEHHLDLGQSHDHELGLRHHPLDHHGSGLGQDLENEATSGDSNGRENESGGIDENAEPIGRAVKFFPQRNGF VVLYENDDLSLSAYGANGKLMGTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005528 [exp]	0	1
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	2.0	0.9139
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019080 [exp]	4.1	0.8566
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	5.3	0.8626
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	5.3	0.8981
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	11.2	0.8556
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	11.2	0.8785
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	16.9	0.8903
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	17.5	0.8782
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	17.9	0.8747
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	18.7	0.8635

Compare expression of checked genes

Lus10005528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.