Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04610 556 / 0 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT4G26000 297 / 2e-94 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT5G15270 117 / 6e-28 RNA-binding KH domain-containing protein (.1.2) AT1G51580 113 / 3e-26 RNA-binding KH domain-containing protein (.1) AT1G14170 99 / 4e-22 RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 95 / 3e-20 RNA-binding KH domain-containing protein (.1.2) AT5G53060 91 / 6e-19 RNA-binding KH domain-containing protein (.1.2) AT5G46190 88 / 4e-18 RNA-binding KH domain-containing protein (.1) AT5G64390 76 / 3e-14 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G04430 66 / 2e-11 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006565 [exp] 984 / 0 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10000120 [exp] 340 / 5e-115 AT3G04610 132 / 1e-35 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10026963 [exp] 276 / 2e-87 AT4G26000 393 / 6e-134 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10020163 [exp] 272 / 5e-85 AT4G26000 414 / 3e-141 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 107 / 1e-24 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 105 / 1e-23 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 103 / 6e-23 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 103 / 6e-23 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 96 / 1e-20 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056100 [exp] 637 / 0 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.013G043000 [exp] 630 / 0 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.018G004000 [exp] 303 / 2e-97 AT4G26000 429 / 4e-147 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.006G277200 [exp] 291 / 1e-92 AT4G26000 427 / 2e-146 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 126 / 1e-30 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 123 / 9e-30 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 122 / 1e-29 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 104 / 2e-23 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.014G045000 [exp] 101 / 2e-23 AT5G15270 106 / 2e-25 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 101 / 2e-22 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10005530 pacid=23158834 polypeptide=Lus10005530 locus=Lus10005530.g ID=Lus10005530.BGIv1.0 annot-version=v1.0 ATGGCTGAACTTGGTCATAGCATTGGTGACCATGAGATTGAGCATGCTGAACTTCCTGGTATTGAGCTTACAGCGGACGGAACGGTGGAACATGCCATAG ATGGTGTTGATCATGCCACGGAGCAGGATGTAGATAATCTAGAAGGTCAGGACTTCGATTATATACCAGAGCATGTTGACGAACAATCTCTTGACCCCAA TATGGATCAAGGTGTAGATGATGTTGGTAATGTCGTGAACTCCCATGTAGAACATGAAGCAGATCAAGAGTTAACAGTTGAAAATGAGGCTGAACACAGT TTAGATCAGCATTTAAACCAGGAAATTGGAGATAGCGACGATCAGGATATAGCAGAAGAAACTGAACACCTTCAGGATCAAGAAAATCTAGAACTAGAAG ATACTGTAGTTGCTGATCGTGAAAAGAGGTGGCCTGGATGGCCTGGAGAGAGTGTCTTCCGTATGTTGGTTCCTGCACAGAAAGTTGGTAGTATAATCGG GCGCAAGGGAGAGTTCATTAAGAAAATAGTAGAAGAGACAAGAGCTCGCGTGAAGATACTTGATGGTCCTCCAGGAACAGCAGAACGAGCAGTAATGGTT TCTGGTAGAGAGGAGCCAGATTCTTCACTACCTCCTGCTATGGATGGTCTCTTGAGGGTTCACAAACGTATTATCGATGGTTTAGATGGCGACAATTCAA ATTCACAATCTGGAAATCCAACAAAAGTATCAACTAGGCTCTTAGTACCAGCTTCACAAGCAGGAAGTTTGATTGGAAAACAAGGAGCAACTGTGAAGTC CATACAAGAAACATCTGGTGCTATTGTTCGAGTTCTTGGATCAGAAAATCTTCCAGTATTTTCCCTTCAGGATGACAGAGCTGTTGAAATCCTCGGAGAG CCACCTGTTGTGCACAAAGCTCTGGAGTTAATTGCCTCTCATCTCAGAAAGTTTCTTGTCGACCGCAGTATAATTCCAGTATTTGAAAATTCTATGCAAA TGGCAAATCGTCAAATGGATCATATGCAACCTCCTCATCAATCATGGGGACCTCCACAAGGTCTTCCACCACCTGCTGGTGGTGCTCCTGGTTATGGACA TAATCTCCCTGCTCAATTTATGCCACCTCCACGGCAAGCTGACAATTACTATCCTCCATCTGACATGCCTCCGCCGATGGAGAAACAGCCTCACCAAGGC ATATCTGCTTATGGAAGAGAAGCTCCAATGAGTGGTCATGGATCATCAAATCCTCAGGCTCCATCGATGATCACACAGATTACGCAGCAAATGCAGGTCC CATTAGCTTATGCTGATGCTGTCATTGGGACGGGTGGTGCAAGTATAAGCTACATTCGACGTGCTAGTGGTGCCACTGTAACTGTACAAGAATCCAGAGG CGCACCTGGAGAAATGACTGTAGAAATAAGTGGAAGTGCATCCCAAGTTCAAACAGCTCAGCAGCTAATTCAGAACTTCATGGCTGAAGCCAGCGCTCCA GCACAGGGACAGGGACAAACCGGGGGATCTGCCGATCAATCGTATAACCCATACGCGGGTCATGGTTCAGTATATGCATCCCCGCCTAATGCAGGCCATG CAGGGGGATATGGTTCGGTGTATGGCGGAAACTATGGCTACTAG
AA sequence Show only first row Show all	>Lus10005530 pacid=23158834 polypeptide=Lus10005530 locus=Lus10005530.g ID=Lus10005530.BGIv1.0 annot-version=v1.0 MAELGHSIGDHEIEHAELPGIELTADGTVEHAIDGVDHATEQDVDNLEGQDFDYIPEHVDEQSLDPNMDQGVDDVGNVVNSHVEHEADQELTVENEAEHS LDQHLNQEIGDSDDQDIAEETEHLQDQENLELEDTVVADREKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARVKILDGPPGTAERAVMV SGREEPDSSLPPAMDGLLRVHKRIIDGLDGDNSNSQSGNPTKVSTRLLVPASQAGSLIGKQGATVKSIQETSGAIVRVLGSENLPVFSLQDDRAVEILGE PPVVHKALELIASHLRKFLVDRSIIPVFENSMQMANRQMDHMQPPHQSWGPPQGLPPPAGGAPGYGHNLPAQFMPPPRQADNYYPPSDMPPPMEKQPHQG ISAYGREAPMSGHGSSNPQAPSMITQITQQMQVPLAYADAVIGTGGASISYIRRASGATVTVQESRGAPGEMTVEISGSASQVQTAQQLIQNFMAEASAP AQGQGQTGGSADQSYNPYAGHGSVYASPPNAGHAGGYGSVYGGNYGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	0	1
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	2.0	0.9366
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	2.8	0.9138
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10007984 [exp]	3.2	0.9096
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	6.3	0.8980
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	6.6	0.9096
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	6.7	0.8985
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	7.3	0.9098
AT3G47850			unknown protein		Lus10042163 [exp]	10.9	0.8599
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	11.0	0.8975
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	11.5	0.9020

Compare expression of checked genes

Lus10005530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.