Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04620 174 / 3e-56 DAN1 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) AT1G29250 146 / 8e-46 Alba DNA/RNA-binding protein (.1) AT2G34160 144 / 5e-45 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006564 [exp] 191 / 4e-63 AT3G04620 189 / 2e-62 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10019423 [exp] 149 / 6e-47 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10043279 [exp] 149 / 6e-47 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10002027 [exp] 138 / 2e-42 AT2G34160 193 / 6e-65 Alba DNA/RNA-binding protein (.1) Lus10002901 [exp] 137 / 3e-42 AT2G34160 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Lus10022212 [exp] 105 / 4e-29 AT2G34160 107 / 4e-30 Alba DNA/RNA-binding protein (.1) Lus10021222 [exp] 73 / 1e-16 AT2G34160 75 / 1e-17 Alba DNA/RNA-binding protein (.1) Lus10019424 [exp] 58 / 3e-10 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056000 [exp] 171 / 3e-55 AT3G04620 177 / 8e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.013G042900 [exp] 167 / 9e-54 AT3G04620 179 / 2e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.006G252000 [exp] 152 / 5e-48 AT1G29250 164 / 2e-53 Alba DNA/RNA-binding protein (.1) Potri.018G029300 [exp] 150 / 2e-47 AT1G29250 180 / 1e-59 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10005531 pacid=23158845 polypeptide=Lus10005531 locus=Lus10005531.g ID=Lus10005531.BGIv1.0 annot-version=v1.0 ATGACGATGGAAACAGTAGCAGCGACGGCGGTTCCGGCGGTGGTGAGTAATAACGATGAAATTAATAGCGACGATAAGACAATTAATCAACAACAGCAAG TTCAGCAGCAGAAGAAGAACAGGATTCAAGTTTCCAATACCAAGAAGCCTCTCTTCTTCTATGTCAATCTTGCCAAGAGGTACATACAACAACACAATGA GGTGGAGCTTTCAGCCCTTGGCATGGCAATTACAACAGTGGTTACAATTGCTGAGATACTGAAGAACAATGGCTTAGCAACTGAGAAGAAGGTTTTGACA TCAACAGTAGGGATGAAGGATGAGAACAAAGGGCGTCTTGTTCAAAAGGCCAAAATAGAGATAGTGTTGGGGAAATCAGACAAGTTCGATAGCTTGATGA CTGCTTCTGCAACCACAACAACAACACCACCTCCACCAGACACCACAACAAGTGATGATATTCAAGACAAGAAGGAATGA
AA sequence Show only first row Show all	>Lus10005531 pacid=23158845 polypeptide=Lus10005531 locus=Lus10005531.g ID=Lus10005531.BGIv1.0 annot-version=v1.0 MTMETVAATAVPAVVSNNDEINSDDKTINQQQQVQQQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLT STVGMKDENKGRLVQKAKIEIVLGKSDKFDSLMTASATTTTTPPPPDTTTSDDIQDKKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10005531 [exp]	0	1
					Lus10026438 [exp]	1.0	0.9200
					Lus10011908 [exp]	4.2	0.8817
AT1G47710			Serine protease inhibitor (SER...		Lus10009906 [exp]	4.6	0.8272
					Lus10000351 [exp]	6.0	0.8969
					Lus10002886 [exp]	7.3	0.8969
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	8.5	0.8969
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	8.9	0.8332
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	9.5	0.8969
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	10.4	0.8969
					Lus10023108 [exp]	11.2	0.8969

Compare expression of checked genes

Lus10005531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.