Gene [FLAX] | FIBexDB

Lus10005532 [FLAX]

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JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10003038 [exp]	147 / 5e-42	ND	61 / 7e-10
Lus10008569 [exp]	137 / 2e-39	AT1G48120	50 / 6e-07	hydrolases;protein serine/threonine phosphatases (.1)
Lus10029535 [exp]	131 / 1e-37	AT1G48120	50 / 1e-07	hydrolases;protein serine/threonine phosphatases (.1)
Lus10034854 [exp]	123 / 9e-35	AT1G48120	69 / 3e-14	hydrolases;protein serine/threonine phosphatases (.1)
Lus10022953 [exp]	111 / 2e-30	ND	/
Lus10024253 [exp]	111 / 1e-29	AT1G48120	40 / 4e-04	hydrolases;protein serine/threonine phosphatases (.1)
Lus10003770 [exp]	104 / 2e-27	ND	/
Lus10002004 [exp]	97 / 9e-25	AT1G48120	58 / 2e-10	hydrolases;protein serine/threonine phosphatases (.1)
Lus10035254 [exp]	94 / 3e-23	AT1G48120	41 / 1e-04	hydrolases;protein serine/threonine phosphatases (.1)

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10005532 pacid=23158835 polypeptide=Lus10005532 locus=Lus10005532.g ID=Lus10005532.BGIv1.0 annot-version=v1.0

ATGCGTCGCACATTGACTCAGAGCCTCTTGCTTCCAAAGTACAGACAGTTGTTCGATGAGGAAACCTTGTTCATGTGGGTCCCCTACCGCAGCGATGCAG

ATTCCACACACTCTAATGTGGCACACAGGATCGTTGCCCCCACTGATTTCGCCCCGCAGCATTTCTTGGCATTGGCCAGACCGTGTCCTCTAACAGTTTG

GTATGTCCTAGCCCATCCCCACTGTGGACATGTTGGAGGGCGATGTCATGTTCTTTCTTGGACTGACGCAGAGGAACGAGCAATTGTGGGAGGTGAGGGT

GGATCAGTACCTTATCCAGTGGGCCACCAGATTGGACCATGTGGTGGCGATTGTTTTTCTCCACGATCCGGAGAGGTGGCACTTCCACGACGAGTACATG

GTGTGGTACCGTCAGTACAATCGTCGGTGGACTTCGAGACGTGGGACAGTACAGTAGTCCATCGTACGTCCTTTAGCACCCTCCAATTACAATACAAGCT

GACAATGGAGCCGCATGAGTGGTCCCATCCACCTCCATCACAGCAATGGTCCCAGCTACCTCCGTCCCAGCAATGTTTCCCCCATATGGGTCACGATAGA

GCCAGTAGCTCACACCCACAGTGGGTCGGTGAGACACAACACCCGGAGTTCCAATCCGAGATGATGACGCCTGAGGAGCATATAGTCAGACAGGATGGGA

GGACACAACACCTCAGAGGAACCATCGACATGGGTTGTGAACCAATCCTCGACTGGCCATGTGCGACACCAGAAACCATCCTAGAGCAGCTCACTAGAGG

TTTGAAGAGGGAGGGCGCGCTTGATTGTCCTCTGAGTTATTGGGCAAGTCCTTCGGATATGCCCCAAAATGTGGCATACGGGGCACACCATCTGTGA

AA sequence

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>Lus10005532 pacid=23158835 polypeptide=Lus10005532 locus=Lus10005532.g ID=Lus10005532.BGIv1.0 annot-version=v1.0

MRRTLTQSLLLPKYRQLFDEETLFMWVPYRSDADSTHSNVAHRIVAPTDFAPQHFLALARPCPLTVWYVLAHPHCGHVGGRCHVLSWTDAEERAIVGGEG

GSVPYPVGHQIGPCGGDCFSPRSGEVALPRRVHGVVPSVQSSVDFETWDSTVVHRTSFSTLQLQYKLTMEPHEWSHPPPSQQWSQLPPSQQCFPHMGHDR

ASSSHPQWVGETQHPEFQSEMMTPEEHIVRQDGRTQHLRGTIDMGCEPILDWPCATPETILEQLTRGLKREGALDCPLSYWASPSDMPQNVAYGAHHL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005532 [exp]	0	1

Lus10005532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.