Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54460 114 / 3e-29 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 90 / 3e-21 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 84 / 2e-18 WDL1 WVD2-like 1 (.1.2.3) AT3G23090 69 / 6e-13 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT4G32330 64 / 4e-11 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G35880 63 / 5e-11 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 62 / 1e-10 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 41 / 0.0007 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006563 [exp] 417 / 8e-148 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 167 / 2e-49 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 160 / 6e-47 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10000016 [exp] 85 / 1e-19 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10021223 [exp] 79 / 2e-16 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 75 / 7e-15 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002915 [exp] 71 / 1e-13 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 58 / 4e-09 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 57 / 6e-09 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055900 [exp] 150 / 2e-42 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 144 / 2e-40 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G162800 [exp] 91 / 2e-20 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 90 / 3e-20 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.016G066600 [exp] 66 / 5e-12 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 66 / 8e-12 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G254400 [exp] 63 / 5e-11 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 61 / 2e-10 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 45 / 4e-05 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 43 / 0.0002 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10005533 pacid=23158836 polypeptide=Lus10005533 locus=Lus10005533.g ID=Lus10005533.BGIv1.0 annot-version=v1.0 ATGGATGAGATGCATGCGGGGAAGTCGAACGGCGTGTCAAATGCTAACGATATCCAGTCACCTTTCAGTGGGAAGAGTTCAAAGCATACCTCGCCTAGGT CGGTAAGAAAGGCCTTCCACCATGATGATGAAGACGACATGGGCTCGGTCGCTTCCTCAACTGCTGCATCTGTCAGGACTGTTAAATCTGTCACTGTTGG TTCAGCTCCCTCATTTAAGTCTGCTGAAAGAGCCCAGAGGCGGAGGGAGTTTTATACTAAATTGGAGGAAAAACACAAAGCTCTGGAGGCTGAGAAAAGC CAGGCTGATGCCAGGACCAAGGAAGAGCAGCAAGCAGCCATTAAGCAGATGAGAAGGAACATGATTGTTAGAGCAAACCCAGTACCTACTTTCTACTATG AGCCACCTCCACCTAAGGCTGAACTCAAGAAGGTGCCATTAACCCGGCCAGTGTCACCGAAGCTAAACAGGAGAAAGAGCTGTGGCGATGTGGTCCAACC ATCTCGCGAGCAACAAGTCAGCAAGCATTGTGCTAGGCATCGCCGTAGCCTTGGCAGCAACCATAATCTTAAAGAATCGCCATCTCCTGCTAAAGCCAAG ACTCGGTCAAGCACTGCAACAGCAAATGGTACTTCTTCACCCCACAAAGCGAAAATCCAATCCGGCACAGAGCAACGTCAATCTCGTGTAGCCACAACGA CAAATGCTTCTGAAAAGATTGTCGAGCAGCAGCCAAGCTCGAACATCGCAGAACAGAAAATCCAACCCGAACCAGAACAACATCAACATCATGTAGCAAC CACGACCAATGCCGCCGCTGCTCCTGAAAAGATCACCGGACAGCCAAGCTCGAACATAGCAGAAGCGCATCAGCATGATGAAATGATCAACGAGAAGACT AGCATCGACTTATCTGTGGAATCATGA
AA sequence Show only first row Show all	>Lus10005533 pacid=23158836 polypeptide=Lus10005533 locus=Lus10005533.g ID=Lus10005533.BGIv1.0 annot-version=v1.0 MDEMHAGKSNGVSNANDIQSPFSGKSSKHTSPRSVRKAFHHDDEDDMGSVASSTAASVRTVKSVTVGSAPSFKSAERAQRRREFYTKLEEKHKALEAEKS QADARTKEEQQAAIKQMRRNMIVRANPVPTFYYEPPPPKAELKKVPLTRPVSPKLNRRKSCGDVVQPSREQQVSKHCARHRRSLGSNHNLKESPSPAKAK TRSSTATANGTSSPHKAKIQSGTEQRQSRVATTTNASEKIVEQQPSSNIAEQKIQPEPEQHQHHVATTTNAAAAPEKITGQPSSNIAEAHQHDEMINEKT SIDLSVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54460			TPX2 (targeting protein for Xk...		Lus10005533 [exp]	0	1
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	10.0	0.6510
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	10.5	0.6702
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	37.1	0.6915
AT1G59650		CW14	Protein of unknown function (D...		Lus10036683 [exp]	64.7	0.6554
					Lus10014959 [exp]	81.6	0.6290
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	98.8	0.6357
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	105.5	0.6240
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	159.1	0.6014
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	160.1	0.6131
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	191.4	0.6012

Compare expression of checked genes

Lus10005533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.