Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30620 108 / 9e-29 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 77 / 2e-16 winged-helix DNA-binding transcription factor family protein (.1) AT2G18050 68 / 8e-14 HIS1-3 histone H1-3 (.1.2) AT1G49950 56 / 6e-09 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G72740 54 / 4e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G14900 51 / 2e-07 HMGA high mobility group A (.1) AT1G54260 48 / 1e-06 winged-helix DNA-binding transcription factor family protein (.1) AT1G48620 48 / 4e-06 HON5 high mobility group A5 (.1) AT3G18035 47 / 8e-06 HON4 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006562 [exp] 160 / 3e-49 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10022001 [exp] 123 / 1e-33 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042541 [exp] 118 / 1e-31 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005535 [exp] 114 / 1e-30 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006561 [exp] 103 / 4e-26 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10014267 [exp] 67 / 2e-13 AT2G18050 102 / 1e-28 histone H1-3 (.1.2) Lus10025968 [exp] 67 / 3e-13 AT2G18050 132 / 6e-39 histone H1-3 (.1.2) Lus10032231 [exp] 59 / 1e-09 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10024594 [exp] 57 / 3e-09 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042700 [exp] 89 / 2e-21 AT2G30620 66 / 2e-13 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.008G162300 [exp] 76 / 1e-16 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.010G076800 [exp] 76 / 1e-16 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.002G199900 [exp] 76 / 2e-16 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G219800 [exp] 74 / 3e-15 AT1G06760 89 / 1e-20 winged-helix DNA-binding transcription factor family protein (.1) Potri.002G043100 [exp] 72 / 1e-14 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G116600 [exp] 69 / 7e-14 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.007G014200 [exp] 65 / 1e-12 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.015G040200 [exp] 66 / 3e-12 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.012G048500 [exp] 55 / 1e-08 AT1G14900 66 / 5e-12 high mobility group A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10005534 pacid=23158828 polypeptide=Lus10005534 locus=Lus10005534.g ID=Lus10005534.BGIv1.0 annot-version=v1.0 ATGGCTGAAACGGAAGCTCCCCTCGCCACCGTCCCGGAAACCACCCCGGCGGAGTCGAAGCCCACACCCAAATCGGCGGCCAAGTCCAAAGCTTCAAAGA CGTCGAAGAAGTCAGCTGCTGCTCCTAAAGCTAAGAAGCCCAGAGCTCCCCGCGATTATCCTTCTTTCGAAGAGATGATTAGCGACGCGATTTCTACTCT GAAGGAGAGGACCGGATCGAGCCAGATCGCAATCGCCAAGTGCATCGAGGACAAGCAGAAGAAGCTTCCGACGAATTTCAGGAAGCTGCTGTCGACTCAG CTGAAGAGGCTCGCCGCAGCCGAGAAGCTGGTTAGGGTGAAGGCGTCGTTCAAGCTGCCGTCGACGCGGTCCGCACCGTCGGCTCCCGTAACGAAGCCGA AAGCTGCTGCTGAGATGAAGCCTAAGGCGAAAGTGGCTGCTGCGGCTAAGCCGAAAGCGAAAGCTCATGCGCCGAAGGCTGTAACGGCGGCTAAGTCCCC GAGGAAGGCGCCAACTAAGCGGAAGGCTGTTCCGGCGGCTCCGAAGCCTGTGGCCAAAACGGCTAAAACTGCTGCTAAGCCTAAGCCGAAAGCGAAAGCG CCGGTTGTGAGGTCGACCCCGAAGAGGAAGGCGGCGGCTCCAAAGGCTGCTGCTAAGCCGGTAAAGAAAGCTAAGACGGCGTCGGTTACATCGCCGAGCA AGAAGAAAGTGGCTGCGAAGCCGAAGAAGGTTGTAGCAGCGGCGAAGAAGAGTGTGAAGAAGGCTTCCGCTACGAAGAAGGCGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10005534 pacid=23158828 polypeptide=Lus10005534 locus=Lus10005534.g ID=Lus10005534.BGIv1.0 annot-version=v1.0 MAETEAPLATVPETTPAESKPTPKSAAKSKASKTSKKSAAAPKAKKPRAPRDYPSFEEMISDAISTLKERTGSSQIAIAKCIEDKQKKLPTNFRKLLSTQ LKRLAAAEKLVRVKASFKLPSTRSAPSAPVTKPKAAAEMKPKAKVAAAAKPKAKAHAPKAVTAAKSPRKAPTKRKAVPAAPKPVAKTAKTAAKPKPKAKA PVVRSTPKRKAAAPKAAAKPVKKAKTASVTSPSKKKVAAKPKKVVAAAKKSVKKASATKKAKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	0	1
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	1.4	0.8827
AT5G37930			Protein with RING/U-box and TR...		Lus10009111 [exp]	3.2	0.8606
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	3.5	0.8458
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	6.2	0.8321
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	6.3	0.8460
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	6.9	0.8461
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	10.8	0.8412
AT4G28100			unknown protein		Lus10018524 [exp]	11.0	0.8444
AT5G27690			Heavy metal transport/detoxifi...		Lus10015174 [exp]	13.8	0.8131
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	14.0	0.8543

Compare expression of checked genes

Lus10005534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.