Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30620 121 / 5e-34 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 79 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) AT2G18050 64 / 2e-12 HIS1-3 histone H1-3 (.1.2) AT1G49950 56 / 4e-09 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G72740 54 / 2e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G48620 50 / 4e-07 HON5 high mobility group A5 (.1) AT3G18035 50 / 5e-07 HON4 winged-helix DNA-binding transcription factor family protein (.1) AT5G67580 45 / 3e-05 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G54260 43 / 8e-05 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006561 [exp] 155 / 2e-46 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 117 / 1e-31 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 114 / 1e-31 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10022001 [exp] 106 / 3e-27 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042541 [exp] 102 / 1e-25 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10025968 [exp] 67 / 5e-13 AT2G18050 132 / 6e-39 histone H1-3 (.1.2) Lus10014267 [exp] 64 / 1e-12 AT2G18050 102 / 1e-28 histone H1-3 (.1.2) Lus10032231 [exp] 56 / 6e-09 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10024594 [exp] 56 / 6e-09 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042700 [exp] 94 / 3e-23 AT2G30620 66 / 2e-13 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.008G162300 [exp] 81 / 1e-18 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.002G043100 [exp] 76 / 5e-16 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.010G076800 [exp] 74 / 6e-16 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G219800 [exp] 75 / 1e-15 AT1G06760 89 / 1e-20 winged-helix DNA-binding transcription factor family protein (.1) Potri.007G014200 [exp] 71 / 8e-15 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.002G199900 [exp] 69 / 4e-14 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G116600 [exp] 68 / 1e-13 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.015G040200 [exp] 65 / 8e-12 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.012G048500 [exp] 59 / 5e-10 AT1G14900 66 / 5e-12 high mobility group A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10005535 pacid=23158824 polypeptide=Lus10005535 locus=Lus10005535.g ID=Lus10005535.BGIv1.0 annot-version=v1.0 ATGACTGAAGTCAAATCCGCCGCCATTGTCCAAGTCCCCGTCGTCGGTACGCCGTCGAAGAAATCCGTCAAGGCCAAATCAATCAAGGCGAAGAAGCCTG CTGCTGCTGATTCCAAGAAACCAAGGGCTCCCCGGAACTATCCTTCCTTCCAAGTGATGATTAGCGATGCGATTGTGGCATTGAAGGAGAGGACCGGGTC GAGCCAGATCGCGATCACAAAGTACATCGAGGACAACCACAAGAACCTGCCGCCGAATTTCAGGAAGCTTCTGCTGAATCAGTTGAAGAGGCTCGTCACC GCCGAAAAGCTCGTGAAAGTGAAGGCCTCGTTCAAGCTACCTTCCGCTCGCTCCTCCTCAACCGCTGTCTCCGCCTATCCGGCCTCTAAGAAGTCCGCTG TCGAGAATCCGAAAGCGACGAAGTTGAAAGCCGCCGCCGCCGCCGCTACTACTAAGCCGAAGGCCAAACCGGCTGCTGGCGCCGCTACCAAGCCGAAGGC TAAATCGGCTAAGCCAACAACTGCAGCGGCTAAGCCGGCTGCCAACGCACATCCGAAGAGGAAGGCTGCTGACGTGGCTGCTCCGAAGCTTGGTGTCAAG CCGTCCAAGTCGAAGAAAGCAAAGACCGCTTCTATTTCTTCTGTTAAGTCGCCAGGAAAGAAAGTTGCGGCGAAGCCGAAGAAGGTGGTGCCGAAGCCCA AGAGCGTGAAATCTCCAATCAAGAAAACTGCGGCGGCAGCAAAGAAGTCTAGGAAGTAG
AA sequence Show only first row Show all	>Lus10005535 pacid=23158824 polypeptide=Lus10005535 locus=Lus10005535.g ID=Lus10005535.BGIv1.0 annot-version=v1.0 MTEVKSAAIVQVPVVGTPSKKSVKAKSIKAKKPAAADSKKPRAPRNYPSFQVMISDAIVALKERTGSSQIAITKYIEDNHKNLPPNFRKLLLNQLKRLVT AEKLVKVKASFKLPSARSSSTAVSAYPASKKSAVENPKATKLKAAAAAATTKPKAKPAAGAATKPKAKSAKPTTAAAKPAANAHPKRKAADVAAPKLGVK PSKSKKAKTASISSVKSPGKKVAAKPKKVVPKPKSVKSPIKKTAAAAKKSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	0	1
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	1.0	0.9123
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	1.4	0.8950
AT5G57950			26S proteasome regulatory subu...		Lus10036267 [exp]	4.2	0.8443
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	5.9	0.8746
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	9.4	0.8697
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	10.5	0.8905
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	11.1	0.7765
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	12.4	0.8397
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	12.6	0.8844
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	13.6	0.8177

Compare expression of checked genes

Lus10005535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.