Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08790 103 / 9e-29 Protein of unknown function (DUF1685) (.1) AT5G28690 102 / 3e-28 Protein of unknown function (DUF1685) (.1) AT3G04700 91 / 6e-24 Protein of unknown function (DUF1685) (.1) AT3G04710 92 / 8e-23 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G43340 56 / 2e-10 Protein of unknown function (DUF1685) (.1) AT4G33985 53 / 1e-09 Protein of unknown function (DUF1685) (.1) AT1G05870 53 / 2e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT3G50350 53 / 2e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G15590 50 / 6e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G31560 52 / 7e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006560 [exp] 202 / 5e-68 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 100 / 5e-28 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 95 / 3e-26 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 52 / 5e-09 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 50 / 1e-08 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10002400 [exp] 50 / 2e-08 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10025562 [exp] 45 / 2e-06 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10027022 [exp] 45 / 2e-06 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10019852 [exp] 44 / 2e-06 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042400 [exp] 89 / 6e-23 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 88 / 1e-22 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 64 / 9e-14 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 63 / 3e-13 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.007G126700 [exp] 51 / 1e-08 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 50 / 2e-08 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.009G101300 [exp] 49 / 5e-08 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10005536 pacid=23158844 polypeptide=Lus10005536 locus=Lus10005536.g ID=Lus10005536.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCCTCTGCCCCCCAGTCGCCGGCGACGACGACCGAGCTTCAGAGGATGAACCTAGGGAAGATGAAGAGCAAGCGGTGTCTGTCGAAGCAGC TGTCGATGCGGGAGACGTCGAGGGACGTGGCGTGGGAGAAGAGGCGGAGGCAGATCTTGAGGCAGGAGAGGCGGAGGTGCGGGATCCCGACGGTGGATTC GCCTGAGGATCTAACCGACGAGGATTTGAAGGAGCTTAGAGGGTGTATTGAGCTCGGGTTCGGGTTCAATGAGGAGAAAGGACAGCATTTGGCCAACACT TTCCCGGCTTTGGATCTTTACTTCGCCGTTAACCCCGGAGGATCTTACCGACGAGGATCTGAAGGAGCTTAA
AA sequence Show only first row Show all	>Lus10005536 pacid=23158844 polypeptide=Lus10005536 locus=Lus10005536.g ID=Lus10005536.BGIv1.0 annot-version=v1.0 MAVASAPQSPATTTELQRMNLGKMKSKRCLSKQLSMRETSRDVAWEKRRRQILRQERRRCGIPTVDSPEDLTDEDLKELRGCIELGFGFNEEKGQHLANT FPALDLYFAVNPGGSYRRGSEGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28690			Protein of unknown function (D...		Lus10005536 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	6.2	0.6104
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	10.9	0.5748
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10019550 [exp]	11.1	0.5652
					Lus10006424 [exp]	11.2	0.5046
AT2G29880			unknown protein		Lus10005028 [exp]	12.6	0.5481
					Lus10007505 [exp]	13.7	0.5676
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	23.5	0.5368
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	25.1	0.5368
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	26.7	0.5368
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	28.1	0.5368

Compare expression of checked genes

Lus10005536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.