Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53950 311 / 4e-105 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15170 278 / 7e-93 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G61430 273 / 9e-91 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G07680 267 / 2e-88 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G18270 261 / 7e-86 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT2G24430 254 / 2e-83 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G39610 253 / 3e-83 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G18400 253 / 4e-83 NAC ANAC058 NAC domain containing protein 58 (.1) AT3G29035 249 / 2e-81 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT3G04060 247 / 2e-80 NAC ANAC046 NAC domain containing protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041924 [exp] 389 / 5e-138 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10021659 [exp] 268 / 2e-88 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10001648 [exp] 268 / 2e-88 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10026879 [exp] 254 / 5e-83 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10009669 [exp] 251 / 8e-82 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10009029 [exp] 249 / 4e-81 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10003435 [exp] 249 / 1e-80 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10020165 [exp] 249 / 2e-80 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026966 [exp] 247 / 1e-79 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G396300 [exp] 327 / 6e-112 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G115400 [exp] 309 / 2e-104 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G001400 [exp] 275 / 8e-91 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 266 / 1e-87 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.019G031600 [exp] 265 / 2e-86 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.013G054200 [exp] 262 / 1e-85 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.005G255900 [exp] 259 / 2e-84 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G005800 [exp] 259 / 2e-84 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.006G277000 [exp] 256 / 6e-84 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.012G056300 [exp] 253 / 6e-83 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10005537 pacid=23139624 polypeptide=Lus10005537 locus=Lus10005537.g ID=Lus10005537.BGIv1.0 annot-version=v1.0 ATGGATCCACACCCTTTCCTCCCTTGCTTCCCATACTCCAACCCTCCTCCATCAACCGACTACACCACCACCGCCAATTTCAACTACACTTCCTCCGCCA ACCACCACCAACAAAACCAAACCACCAACCTCCCACCAGGCTTCAGATTCCACCCGACCGACGAGGAGCTCATAACATACTACCTCCTCAAAAAGGTCAT GGACTCCTCCTTCTCCGGCCGCGCCATAGCCGAGGTGGACCTCAACAAGTGCGAGCCTTGGCACTTGCCGGAGAAGGCCAAGATGGGGGAGAAAGAGTGG TACTTCTTCTCCCTCCGAGACCGCAAGTATCCGACCGGTCTCCGGACCAATCGGGCCACCGAGGCCGGGTACTGGAAGGCTACTGGAAAGGACAGGGAGA TCTACAGTAGCAAAAGCTGTGCCCTTGTTGGGATGAAGAAGACTCTTGTTTTCTACCGTGGGAGGGCTCCTAAGGGTGAGAAGAGCAATTGGGTCATGCA TGAGTATCGTTTGGAAGGGAAGTTCTCGTATCACTATCTCTCTCGCTCGTCCAAGGATGAGTGGGTGATCTCCCGAGTTTTCCAGAAGACCGGCGCCGGC GCCGGAAGCTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGCCGCTAAAAGCGGAAGCACGACGACCTCGTCCAAGAAGCCACGCTACAACA ACTCGGCGGCGGCGGGGCTTTACCAGGAAGTGAACTCTCCTACGTCCTCGGTGTCGCATCTCCCGCCTCTGCTGGACCCCACCACCGGTGACAGCTGCTC CTACGACGGCGGCAACCATTCCGTCCGTCACCAGCAGCAGCACGTGTCCTGTTTCTCCACTAGCTCCACCGTTGATGCTACTCAGAACCATCACTTGATG CTCATCAAAGCCATCACCACCAGATGCTGA
AA sequence Show only first row Show all	>Lus10005537 pacid=23139624 polypeptide=Lus10005537 locus=Lus10005537.g ID=Lus10005537.BGIv1.0 annot-version=v1.0 MDPHPFLPCFPYSNPPPSTDYTTTANFNYTSSANHHQQNQTTNLPPGFRFHPTDEELITYYLLKKVMDSSFSGRAIAEVDLNKCEPWHLPEKAKMGEKEW YFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKSCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSYHYLSRSSKDEWVISRVFQKTGAG AGSCXXXXXXXXXXXTAAKSGSTTTSSKKPRYNNSAAAGLYQEVNSPTSSVSHLPPLLDPTTGDSCSYDGGNHSVRHQQQHVSCFSTSSTVDATQNHHLM LIKAITTRC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	0	1
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	1.0	0.9973
					Lus10026293 [exp]	1.4	0.9973
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	2.0	0.9959
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	3.5	0.9967
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	3.5	0.9895
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	4.5	0.9956
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	4.5	0.9911
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	4.6	0.9951
					Lus10016534 [exp]	4.7	0.9902
AT2G13820		AtXYP2	xylogen protein 2, Bifunctiona...		Lus10031115 [exp]	5.8	0.9781

Compare expression of checked genes

Lus10005537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.