Plant FIBer expression Database

Lus10005538 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15190 130 / 2e-38 chloroplast 30S ribosomal protein S20, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041925
[exp]
229 / 9e-77 AT3G15190 160 / 1e-49 chloroplast 30S ribosomal protein S20, putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G396600
[exp]
153 / 3e-47 AT3G15190 144 / 9e-44 chloroplast 30S ribosomal protein S20, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01649 Ribosomal_S20p Ribosomal protein S20
Representative CDS sequence
>Lus10005538 pacid=23139638 polypeptide=Lus10005538 locus=Lus10005538.g ID=Lus10005538.BGIv1.0 annot-version=v1.0
ATGGCAGCTGCAGTGTTATCTTGCTGCTCTTCCCTTACTTCCAGACTCAACAACCTCTCAATCACCGCCATTCCATCCTCTTCTTCTCCTCAATCTCACT
CCAACCCTTTCCGCTCCATCAAATTCTCTTCTTCCCTTCCCCCCAACAACAATGGCGAGTCTAGGTGTCTGTCGATGACCCAGCGTTCTCTGCGGCGGTC
TACGGTGGTCTGCGAGGCTACTCCCGCTGGCAAAAAGGCTGACTCAGCTGCCAAGCGAGCCCGTCAGAACGAGAAACGAAGGATTTATCATAAGGCGCAC
AAGTCCGAAGTTAGAACCCGGATGAGGAAGGTATTGGAAGCGCTACTCAAGTTGAGAAAGAAGAAAGAGGCAGAACCTGAGGAGGTCCTTCCAATTGAGA
CACTAATTGCCGAAGCCTATTCAGTCATCGATAAAGCTGTAAAGGTGGGATCGCTGCATCGGAATACTGGAGCAAGGAGAAAGTCGCGGCTTGCTAGGGG
TAAGAGGGCTGTTGCTATTCGCCATGGATGGTACACCCCTTCTTCCTCCACTGACGAATCTGCATCAGTTTCTACATAA
AA sequence
>Lus10005538 pacid=23139638 polypeptide=Lus10005538 locus=Lus10005538.g ID=Lus10005538.BGIv1.0 annot-version=v1.0
MAAAVLSCCSSLTSRLNNLSITAIPSSSSPQSHSNPFRSIKFSSSLPPNNNGESRCLSMTQRSLRRSTVVCEATPAGKKADSAAKRARQNEKRRIYHKAH
KSEVRTRMRKVLEALLKLRKKKEAEPEEVLPIETLIAEAYSVIDKAVKVGSLHRNTGARRKSRLARGKRAVAIRHGWYTPSSSTDESASVST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15190 chloroplast 30S ribosomal prot... Lus10005538
[exp]
0 1
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Lus10027894
[exp]
1.4 0.9768
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10037307
[exp]
2.0 0.9711
AT1G29070 Ribosomal protein L34 (.1) Lus10013928
[exp]
5.2 0.9666
AT3G15190 chloroplast 30S ribosomal prot... Lus10041925
[exp]
6.9 0.9526
AT1G29910 AB180, LHCB1.2,... LIGHT HARVESTING CHLOROPHYLL A... Lus10027966
[exp]
7.6 0.9165
AT1G48350 EMB3105 EMBRYO DEFECTIVE 3105, Ribosom... Lus10038770
[exp]
8.0 0.9657
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10035720
[exp]
9.2 0.9542
AT1G48350 EMB3105 EMBRYO DEFECTIVE 3105, Ribosom... Lus10039092
[exp]
9.2 0.9625
AT5G65220 Ribosomal L29 family protein ... Lus10019653
[exp]
10.4 0.9556
AT2G44920 Tetratricopeptide repeat (TPR)... Lus10000520
[exp]
10.4 0.9451

Lus10005538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.