Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02270 103 / 2e-27 RHS13 root hair specific 13 (.1) AT2G47540 102 / 8e-27 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G62680 83 / 2e-18 ATPRP3, PRP3 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, proline-rich protein 3 (.1) AT1G54970 81 / 2e-17 RHS7, ATPRP1 ROOT HAIR SPECIFIC 7, proline-rich protein 1 (.1) AT2G47530 78 / 2e-17 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G33790 49 / 6e-07 ATAGP30 arabinogalactan protein 30 (.1) AT3G09925 48 / 1e-06 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041926 [exp] 446 / 5e-161 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10013419 [exp] 135 / 9e-39 AT4G02270 118 / 3e-33 root hair specific 13 (.1) Lus10008213 [exp] 135 / 4e-38 AT2G47540 127 / 2e-36 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10015434 [exp] 57 / 2e-09 AT1G28290 135 / 1e-39 arabinogalactan protein 31 (.1.2) Lus10010306 [exp] 53 / 1e-08 ND 38 / 9e-04 Lus10014013 [exp] 53 / 4e-08 AT2G34700 137 / 2e-40 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 44 / 3e-05 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10009837 [exp] 44 / 4e-05 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126300 [exp] 124 / 3e-33 AT2G47540 114 / 1e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126200 [exp] 122 / 8e-33 AT2G47540 114 / 3e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126250 [exp] 122 / 1e-32 AT2G47540 112 / 2e-29 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126500 [exp] 120 / 5e-32 AT2G47540 113 / 6e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G145800 [exp] 115 / 5e-31 AT4G02270 118 / 5e-33 root hair specific 13 (.1) Potri.002G201800 [exp] 106 / 4e-28 AT4G02270 118 / 1e-33 root hair specific 13 (.1) Potri.002G201900 [exp] 100 / 3e-26 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.011G053600 [exp] 50 / 5e-07 AT2G34700 139 / 5e-41 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 45 / 1e-05 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10005539 pacid=23139666 polypeptide=Lus10005539 locus=Lus10005539.g ID=Lus10005539.BGIv1.0 annot-version=v1.0 ATGGCCGCAACCCATTTCTTGACCGTGTCATTCCTCCTCGTCTTGTCCATGTCACTAGCCATTGCATCCACGACCGATTACATAACTGCTGTCAAACCTC AAACTAGCTACACTCCGAAACCAAGCTTCGACTTGAAACCAAAACCAGATGGTGACTTGTATGCCAAACCAGTTGATGTCACACATAAACCAGCTTATGG CGGGTATATCTCCACGCCGGGGTTGGAGAAGCTGAAGCTGAGGATGCTTCAATACCAAGGGGCTAACCGAGCCAATCAAGTTGTCCCCAAACATAAACAT GGAAATGCATATCGCCCAAAACCAGAGGCGGTTCAGCATCCCGAGTCTCAAACTAGCAGCATCAAACCGGCACCATACGTGGTCCAGAAGGCAGAAGATG GGTTTGGGGTTGGCGTTGAAGGCATAGTTGCGTGCAAATCGGGATCCGACTACTTCCCACTTCAAGGAGCTGTGGTGAGAATAAGTTGTACGGGAGCCGA GAAGGAGGAGAAGCAAGTATGGAGCTTGACAGATGAAAGGGGTTATTTCTTCAAGCTATTGCATGAGCATAAGGAATCAGACTACTGCAAGGCTTTCCTA GAGCATTCGCCACTAAAGAAATGCAGTTTCAGCACAGATGTGAACAAGGGGACGAGTGGCGCCAAACTCTCCACCTACAAAATTCTACATGATAAAAGCA TCAAGCTTTACCCGGTTGGACCTTTCTTCTACTCTCCCGGCGGCTACTGA
AA sequence Show only first row Show all	>Lus10005539 pacid=23139666 polypeptide=Lus10005539 locus=Lus10005539.g ID=Lus10005539.BGIv1.0 annot-version=v1.0 MAATHFLTVSFLLVLSMSLAIASTTDYITAVKPQTSYTPKPSFDLKPKPDGDLYAKPVDVTHKPAYGGYISTPGLEKLKLRMLQYQGANRANQVVPKHKH GNAYRPKPEAVQHPESQTSSIKPAPYVVQKAEDGFGVGVEGIVACKSGSDYFPLQGAVVRISCTGAEKEEKQVWSLTDERGYFFKLLHEHKESDYCKAFL EHSPLKKCSFSTDVNKGTSGAKLSTYKILHDKSIKLYPVGPFFYSPGGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	0	1
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	1.7	0.9440
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	3.5	0.8970
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025762 [exp]	4.7	0.8341
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	6.9	0.8733
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	7.7	0.8732
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	8.1	0.8613
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	8.8	0.8596
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	9.9	0.8554
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	11.0	0.8442
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	11.3	0.8523

Compare expression of checked genes

Lus10005539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.