Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18475 561 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 208 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 204 / 6e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 196 / 3e-56 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 197 / 2e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 197 / 3e-55 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 187 / 6e-52 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17525 186 / 6e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 184 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 181 / 4e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041927 [exp] 544 / 0 AT5G18475 341 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 212 / 8e-63 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 207 / 2e-58 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005989 [exp] 199 / 3e-57 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10036238 [exp] 199 / 2e-56 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 196 / 6e-55 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 189 / 3e-52 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040869 [exp] 183 / 7e-52 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 187 / 1e-51 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103600 [exp] 638 / 0 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 207 / 3e-60 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G108500 [exp] 205 / 3e-60 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 210 / 7e-60 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G057900 [exp] 204 / 1e-59 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 207 / 4e-59 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 201 / 1e-57 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G102400 [exp] 201 / 6e-57 AT2G17525 756 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 201 / 9e-57 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 192 / 3e-55 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005540 pacid=23139647 polypeptide=Lus10005540 locus=Lus10005540.g ID=Lus10005540.BGIv1.0 annot-version=v1.0 ATGCTATGCAGTAGGAGACAACTTTGCGTGAATGTTCTTCGCCGTAATCTCTCGTCACGCTCGACATCTTCAAAAGAATTTTCCTTCTCATGGATATCTC CCCTGCAAGATGTGAATTTTTCATTGTTAGACGAAACCCCAATGGAACCCCCGAAGCATTCTGCGAGAAAACGCAAGTTCATAACTCACGAGGCTGCTGT AAGCTTGATCGAAACCGAAAGAGACACCCAGCGTGCATTGGAAATATTCAACAGAGTCGGTGAGCAAGACGGTTTCAATCACAATCACGGTACCTATTCT GCCATCTTGCACAAGCTCGGCCGATCCAAGAAGTTCCAAGCTGTCGATGCTTTACTTCACCAGATGACGTACGAGACTTGCAAGTTTCACGAGAGCATAT TCCTCGATCTCATGAGACATTTCTCCAAGTCCTCTCTACACGATCGGGTACTAGACATGTTCGATGCAATTCGGAGGCTTACTCGCGAGAAGCCCTCGTT AAAGGCTGTTAGCACCTGCCTCAACATCTTGATCGAATCGGAGCAGATTGATCTCGCCAGGACTTTCCTTTTGAGCGTCAAGAAGTCATTGAACTTGACA CCGAACACTTGCATTTTCAATATCTTGGTGAAGCATCACTGCAGGGTTGGAGATCTTGAATCTGCAAATGAAGTGGTTAAGGAGATGAGAAAGTCGAGAA CTTCGTATCCGAACTTAATCACGTACTCGACTTTCATGGATGGGCTCTGCGAGCAAGGAAGACTCGAAGAAGCGATTGAGTTGTTCGAGGAGATGGTGTC AAAGGATCAGATCGTACCTGATGCACTTACTTACAATGTACTGATAAACGGATTCTGTCGTTCTGAGAAAGTCGACCGGGCCAGGAAAATAATGGAGTTC ATGAGGCGCAATGGATGTGCTCCGAATTTGTTTAACTATTCTGCTTTGATGAATGGATTTTGCAGAGAAGGGAAGGTGAAAGAGGCCGAAGTGGTCTTCG AGGAAATGAAGACTCAGGGCTTTAAGCTTGACGCAGTTGGATATACGACGTTGATAAATTGCCTATGTCGGGGTGGGAGAACTGATGATGCTTTAGTCTT GCATCAAGAGATGAAGGAAATGGAGTGTAAATCCGATGTTGTCACGTATAATGTACTGCTACGAGGATTTTCGGAAGAAGGGAGGTTTGACGATGCTCTA ACGATGCTGAAGAAGGCAGCGATGGAAGGTGTTTATTTGAACAAAGGGAGTTATAGGATTGTGCTGAACTGCTTATGCAAGGCGGGTGAACTGGAGAAAG CTTCCGCGCTGTTGCGTATGATGCTTGATAAAGGGCATGTCCCGCATTACGCGACATCGAATGAGTTGTTGGTGAAACTCTGTGAAGCTGGAAAGGGTTA TGATGCTGAAATGACATTAGCAGCTCTGATAGGAACTGGCTTCAAACCAGAAGGTGAATCTTGGACTTGTTTGGTGGAGTTGATCTGCAGAGAAAGGAAG TTGTTGTCAGCTTTCGAGCTGCTTGACGAATTGGCTGGATGGTAA
AA sequence Show only first row Show all	>Lus10005540 pacid=23139647 polypeptide=Lus10005540 locus=Lus10005540.g ID=Lus10005540.BGIv1.0 annot-version=v1.0 MLCSRRQLCVNVLRRNLSSRSTSSKEFSFSWISPLQDVNFSLLDETPMEPPKHSARKRKFITHEAAVSLIETERDTQRALEIFNRVGEQDGFNHNHGTYS AILHKLGRSKKFQAVDALLHQMTYETCKFHESIFLDLMRHFSKSSLHDRVLDMFDAIRRLTREKPSLKAVSTCLNILIESEQIDLARTFLLSVKKSLNLT PNTCIFNILVKHHCRVGDLESANEVVKEMRKSRTSYPNLITYSTFMDGLCEQGRLEEAIELFEEMVSKDQIVPDALTYNVLINGFCRSEKVDRARKIMEF MRRNGCAPNLFNYSALMNGFCREGKVKEAEVVFEEMKTQGFKLDAVGYTTLINCLCRGGRTDDALVLHQEMKEMECKSDVVTYNVLLRGFSEEGRFDDAL TMLKKAAMEGVYLNKGSYRIVLNCLCKAGELEKASALLRMMLDKGHVPHYATSNELLVKLCEAGKGYDAEMTLAALIGTGFKPEGESWTCLVELICRERK LLSAFELLDELAGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10005540 [exp]	0	1
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10002871 [exp]	1.7	0.7822
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10015247 [exp]	8.9	0.7700
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	11.9	0.7865
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	13.9	0.7820
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10037885 [exp]	15.2	0.7245
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	19.5	0.7694
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034719 [exp]	20.7	0.6913
AT5G53280		PDV1	plastid division1 (.1)		Lus10039325 [exp]	26.2	0.7402
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	30.5	0.7680
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	39.8	0.7690

Compare expression of checked genes

Lus10005540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.