Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53850 402 / 1e-138 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041928 [exp] 528 / 0 AT5G53850 384 / 5e-131 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10009198 [exp] 491 / 2e-173 AT5G53850 766 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10015966 [exp] 285 / 6e-97 AT5G53850 223 / 5e-72 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399000 [exp] 467 / 6e-164 AT5G53850 792 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Potri.011G118132 [exp] 443 / 4e-157 AT5G53850 425 / 1e-147 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10005542 pacid=23139656 polypeptide=Lus10005542 locus=Lus10005542.g ID=Lus10005542.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGGTGAATGTCGGAGTTAACGTAGCTTCACGCGGGTCTACACTGTTCCCAAAGCCTTACCCTTACAATCCACCAAAGAATTCTCTTAGTT CCCCTCTGTTTATGAAGGCTGAATCTTATCATTATCTGTTTAATGCTGCAATAAAACTAATCCAGCACTCCAGGTTTACACCAATCCATGGTCCGATCCA GGACGTGAGTCGAGGAGCTAGAAGTGCACCATTGAAGGCAGGATTAATGAAGTCTTCAACCCAGAATAGTGAACCATTGCCTCGATGCATCCTGTTGGAC ATTGAAGGGACTACTACGCCTATAACATTCGTTACAGACGTCCTATTTCCTTATGCGCGTGACAATGTCAGAAAGCATTTGTCTGCAACATACGAGACCG AACCTACTCAAGATGATATAAAGCTGTTGCGGTCTCAGGTTGAAGATGACTTAGCACAAGGTGTTAATGGTGCCGTCCCCATCCCACCAGATGATGCTGG AAAGGATGCAGTGATTGCAGCACTGGTTGCTAATGTCGAGGCAATGATAAGAGCAGATCGCAAGATCACAGCTTTAAAACAATTACAAGGGCACGTATGG AGAACTGGGTTTCATAACAATGAGCTGGAAGGAGTAGTTTATGATGATGTGCCTGAAGCATTGAAGAGCTGGCATGCTTTAGGAATTAAGGTGTATATAT ACTCCAGTGGAAGTAGGTTGGCACAAAGGCTGATATTTGGGAACACAAATGCTGGAGATTTGAGGCAGTTTTTGTCTGGTTTTTTCGACACTAACATTGG GACTAAAAGGGAATCCAGCAGTTACATCCAGATTTCTGAGTCACTGGGAGTGGATAGCCCGTCTGAGATTTTGTTCTTGACTGATGTGGTACAAGAAGCA GTTGCAGCTAAAGAAGCAGGTTTGAAGGTGCTGATCACTGTTCGGCCAGGGAACGCTCCTTTGCCGGAGAATCACGGGTTCAAGACCATCAACTCCTTTG TGGAAGTATGA
AA sequence Show only first row Show all	>Lus10005542 pacid=23139656 polypeptide=Lus10005542 locus=Lus10005542.g ID=Lus10005542.BGIv1.0 annot-version=v1.0 MATAVNVGVNVASRGSTLFPKPYPYNPPKNSLSSPLFMKAESYHYLFNAAIKLIQHSRFTPIHGPIQDVSRGARSAPLKAGLMKSSTQNSEPLPRCILLD IEGTTTPITFVTDVLFPYARDNVRKHLSATYETEPTQDDIKLLRSQVEDDLAQGVNGAVPIPPDDAGKDAVIAALVANVEAMIRADRKITALKQLQGHVW RTGFHNNELEGVVYDDVPEALKSWHALGIKVYIYSSGSRLAQRLIFGNTNAGDLRQFLSGFFDTNIGTKRESSSYIQISESLGVDSPSEILFLTDVVQEA VAAKEAGLKVLITVRPGNAPLPENHGFKTINSFVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	0	1
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	2.0	0.9455
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	5.8	0.9375
AT1G64355			unknown protein		Lus10003895 [exp]	6.3	0.9288
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	8.1	0.9359
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	9.3	0.9001
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	13.3	0.9162
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	13.3	0.9186
AT1G80380			P-loop containing nucleoside t...		Lus10028609 [exp]	15.8	0.9080
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10026006 [exp]	16.2	0.9275
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	16.7	0.9237

Compare expression of checked genes

Lus10005542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.