Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 90 / 1e-21 VQ motif-containing protein (.1.2) AT3G15300 87 / 2e-20 VQ motif-containing protein (.1) AT5G53830 81 / 3e-18 VQ motif-containing protein (.1) AT2G33780 61 / 6e-11 VQ motif-containing protein (.1) AT5G08480 44 / 2e-05 VQ motif-containing protein (.1.2) AT1G80450 40 / 0.0007 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041929 [exp] 243 / 1e-80 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2) Lus10015315 [exp] 86 / 8e-20 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10026247 [exp] 53 / 4e-08 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10025443 [exp] 52 / 5e-08 AT1G28280 154 / 2e-47 VQ motif-containing protein (.1.2) Lus10042423 [exp] 51 / 1e-07 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118200 [exp] 116 / 1e-31 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 114 / 8e-31 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.011G053700 [exp] 89 / 6e-21 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 85 / 3e-19 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2) Potri.006G266700 [exp] 46 / 6e-06 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.006G266600 [exp] 43 / 5e-05 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1) Potri.004G134200 [exp] 43 / 7e-05 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10005543 pacid=23139677 polypeptide=Lus10005543 locus=Lus10005543.g ID=Lus10005543.BGIv1.0 annot-version=v1.0 ATGGAAGGAAGCAGTAGCAGTACAGCATTAGTGATGATGAACAATCCTTCTTCATCATCATCATCATCCCAGCAGCAACCAAATCTAATCCAAATTCCTA GATCTCAAATTCCAACTCATTACACTCACCATCACCACCATTTGAATCCTTCCCCAACAACTTTCGTCCAAGCCCACACTTCCACTTTCAAGCAAGTCGT CCAGATGCTCACCGGCTCCCCCGACACCGCCAAGCACGCCTCCCAAGATCCTCCGAGGACCAACAACAACACCAATTTCCCGATTCCCCCAATCAGAAAC AAGAAATTACAGAACAGCCACCAGCAGCAGAGTTTCAAGCTGTACGAGAGGAGGAACAGCAGCTTCAGACACTGCAGCCTCATGATCAACCCCGCCGCCG TCGGCGGCCGTGGTTTCGCCTTCAATTCGCCCTCGTCGTCGTCCCCTTCTTCTGCCGAGATTCTGTCTCCTAGCTTGCTTGATTTCCCCAAGCTGACTCT TCTTAGCCCTGTTACTCCTCTGAACCAGAACGCATTTCGCAACAACGGCAATCAAAACTCCGGCCATTCGTCGGCGGGGAATTGTAGCAGCTCGTCATCG GCGGCGGCGGCGGAGGAGGAAGAGAGGGCGATTGCGGAGAAAGGGTTTTATTTGCATCCTTCGCCGTTGTCGACTCCCAGAGAATCGGAGCCTCAGCTAC TTCCCCTGTTTCCTTTGACATCGCCCAGAGAAGCTAAATCGCCACCGCCGACGACCTGA
AA sequence Show only first row Show all	>Lus10005543 pacid=23139677 polypeptide=Lus10005543 locus=Lus10005543.g ID=Lus10005543.BGIv1.0 annot-version=v1.0 MEGSSSSTALVMMNNPSSSSSSSQQQPNLIQIPRSQIPTHYTHHHHHLNPSPTTFVQAHTSTFKQVVQMLTGSPDTAKHASQDPPRTNNNTNFPIPPIRN KKLQNSHQQQSFKLYERRNSSFRHCSLMINPAAVGGRGFAFNSPSSSSPSSAEILSPSLLDFPKLTLLSPVTPLNQNAFRNNGNQNSGHSSAGNCSSSSS AAAAEEEERAIAEKGFYLHPSPLSTPRESEPQLLPLFPLTSPREAKSPPPTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	1.7	0.9112
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	3.7	0.9093
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	4.0	0.9027
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	4.2	0.9066
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	7.9	0.8806
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	9.2	0.8914
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	10.1	0.8687
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	10.2	0.8819
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	10.2	0.9011
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	10.5	0.8761

Compare expression of checked genes

Lus10005543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.