Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53120 396 / 6e-139 RNA-binding S4 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041931 [exp] 626 / 0 AT1G53120 378 / 8e-132 RNA-binding S4 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119800 [exp] 425 / 3e-150 AT1G53120 424 / 3e-150 RNA-binding S4 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Lus10005545 pacid=23139650 polypeptide=Lus10005545 locus=Lus10005545.g ID=Lus10005545.BGIv1.0 annot-version=v1.0 ATGGCTACCGCCATGCTCCAGACCGCTGCCCCGTGGCTTCTGCGGAGGACAATCCAAAGTTTCGCAGTCTCTCAGCATATTCCAACAGTTTCTAAGCTCC CCTTCCATGGAACCCTCCGCTTTCTTCCGCTCCGTCCTCCTACGAGACATCAACATGTATCAGGCATTTGCAGCTCGGCACAAGCTGTGAAGAAGCAAGT TGATGGGCTACTGAACAGTGTTACAGACAAAAACGTCATTGAAGATGTGAAGTATGTTATTGAAATGGCTACCAGGGCAGCACGGGATCGCAAAATTCTC CATACAGATTTTCTTACTCCGCCAACAGTGAAAGAATCAATGTTTGTCTTGGAAAAACTGGCCGACATTAGAACAGATGTTCAAGGAGGATACCCTGAGG CTGAGCGTTGCCGAATCTCAGTTGCGCATCATGAAGTATTCGCACATGACCCAGATGTAGTTGCAGCAATGAGTATATCAGGAAACTTTGGATTCGTATC CTGTTCTCATGGTGACTTCTTAGGTGCAATTCTTGGTACAGGAGTTGCCAGGGAAAAGGTTGGAGATGTATTACTCTTGCAGGGAGGTAAAGGGGCACAA TTTCTAGTGGTTCCAGAACTTGTCGACTTTTTTATAACCTCTTTGGATAAGGTTGGAAATGTTCCAGTTTCTTGCACGAGGATACCACTGCCTGATATCG AATATCAACCACCAAGCACCAAGACATTTAGAACAGTAGAAGCATCACTCAGGTTAGATGCTTTGGCCAGCGCAGGATTCAAGCTCTCAAGATCCAAACT TGTCGATTTGATCAGCAAAGGGGATGTACGGGTGAACTGGAGCACGGTAACCAAGAACAATACTAGCTTGAAGAGTGGAGATATGGTCTCAGTCAGCGGG AAAGGAAGACTAAAGATAGGAGAAATAAACAGCACAAAGAAAGGGAAGTTTGGAGTCGAGCTCATTCGATACCTGTAA
AA sequence Show only first row Show all	>Lus10005545 pacid=23139650 polypeptide=Lus10005545 locus=Lus10005545.g ID=Lus10005545.BGIv1.0 annot-version=v1.0 MATAMLQTAAPWLLRRTIQSFAVSQHIPTVSKLPFHGTLRFLPLRPPTRHQHVSGICSSAQAVKKQVDGLLNSVTDKNVIEDVKYVIEMATRAARDRKIL HTDFLTPPTVKESMFVLEKLADIRTDVQGGYPEAERCRISVAHHEVFAHDPDVVAAMSISGNFGFVSCSHGDFLGAILGTGVAREKVGDVLLLQGGKGAQ FLVVPELVDFFITSLDKVGNVPVSCTRIPLPDIEYQPPSTKTFRTVEASLRLDALASAGFKLSRSKLVDLISKGDVRVNWSTVTKNNTSLKSGDMVSVSG KGRLKIGEINSTKKGKFGVELIRYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	5.1	0.7717
AT5G53920			ribosomal protein L11 methyltr...		Lus10022389 [exp]	7.7	0.7822
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	8.1	0.7308
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10023640 [exp]	10.2	0.7615
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	10.4	0.7702
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028850 [exp]	20.9	0.7703
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	22.2	0.7521
AT4G34090			unknown protein		Lus10004995 [exp]	23.8	0.7320
AT4G36050			endonuclease/exonuclease/phosp...		Lus10041907 [exp]	28.8	0.6835
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10035645 [exp]	29.5	0.7177

Compare expression of checked genes

Lus10005545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.