Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27500 382 / 1e-124 PPI1 proton pump interactor 1 (.1) AT3G15340 189 / 3e-52 PPI2 proton pump interactor 2 (.1.2) AT5G36690 159 / 8e-42 unknown protein AT5G36780 159 / 8e-42 unknown protein AT1G20970 111 / 4e-25 unknown protein AT1G53110 99 / 5e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041932 [exp] 890 / 0 AT4G27500 410 / 4e-136 proton pump interactor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119700 [exp] 489 / 1e-166 AT4G27500 431 / 6e-144 proton pump interactor 1 (.1) Potri.001G399400 [exp] 467 / 1e-157 AT4G27500 463 / 2e-156 proton pump interactor 1 (.1) Potri.006G191500 [exp] 112 / 2e-25 AT1G20970 309 / 6e-86 unknown protein Potri.013G130500 [exp] 67 / 1e-11 AT1G10880 67 / 2e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005546 pacid=23139671 polypeptide=Lus10005546 locus=Lus10005546.g ID=Lus10005546.BGIv1.0 annot-version=v1.0 ATGGGCGTTGAGGTGGTATCGTCAGATGTGGCTCACGTGACTGTTGAGGCTGTTAATGAAGTTGATAATTCGGTTCTGCATGAGAAGGAGAACGGTAAGC TGGAGAAAGAATCAGGACCGAACGAGGCTATCAAATTTGGCTCTCATGAAAGGGAGGTAGAGAACGGGGATAGCAATGATGTTGTGGATCCCAAGTTGCC TCAGAATGCTCTTGAAGAGTGGCCTGCAGAACCCAAGCAGGTCCATTCTTTCTATTTTGTCAAGTGGTGGCCATATGATGATCCCAAAATTAAGGCTAAA ATCGATCTGGTTGGTAAGGAGATTACTAAGAGGAATGAGGCTTTGACGCGTGTTAATGATCGAACGAGAGCGAAAAGGGATGAGAGAGCAGAGCTGATTG CAGAGCTGAGGCCATTGAAAACCCAAGGTTATGAGCTCAGAAACGTCCTAGGTGAGAAGAGAAAAGAAATGCAACCCTTGCAACAAGCATTAGGGAAGAT GCGAAATAATAATGGTGCTGGTCGTGGTGCGATATGTTCATCAGAGGAAGAGCTTAATGAGCTTATCTACAGCATGCAGTACCACATTCAACATGAAAGC ATCCCGTTGTCTGAAGAGAAACAAATACTGAGAGAAATTAAGCAGCTAGAGGGGACTAGAGAAAAAGTTATTGCCAATGCTGCAATGATAGCCAAGATTC AGGATTCGTTGGGTCAGAAAGAATCAATTCAAGATCAAGTCAAACATATGAATGTCGATATGGATTCAGCGAGGAAGGAGCATGATCTAATCTGGTCAAA AATTGACAAACTGAAAGCAAAAATTGAGGCTTTAGACAAAGAAATTGAATCTATAGATGTGGAACGACAAGCTATTAAACTGAAGAGGGATGAAGCCTTT GATAGTCTCAGACAAATAAGAGAACAGCGTGATGAAGGGAATTCTCAAGTTTATGTTAGCCGTAAAGTCGTGAACCATGCAAGACAGCTTTCCTTTAGTA AGGATGTGCAGGCTATACAGCAACTTTGTCATGAAGAGGGAGAGAAATTTATGTCGGTCTGGAACAATGACAAGGCGTTCAGGAATGATTATGAGAAACG ACTGTTGTCATCACTCGACAAGAGAGTATTGAGTCGTGATGGACGAATCAGGAACCCTGGTGAGAAGCCATTAGTGGCGCATGAGGCACTGTTACCTTCA GAGCCGTTACCAGTGGCAAAGGCTGTTAAGAAACCAGAAGAACCTAAATCTGTAGTGAAGAAGGAAGCACCCGCCAAAAACGTCCAGAAAGTGACCGAGA AGAAAACTGCGAAGACTGCTCCTGAGAAAATTGAGGAAGTTGAGGAAGAGGTGGCGGGATTAGAAATAGCACCGAAAGCCACCCCTGCTGCGGCTCCGGT CGATGAGGCAAAGCTGAAGGAACTGAAAAGAGAGGAGGAAATAGCGAAAGCTAAGCTGGCCATGGAAAGGAAGAAGAAGTTGGCTGAGAAAGCTGCTGCA AAAGCAGCGAAAAGAGCCGAAAAGGAAGCTGAAAAGAAGCTCAAGGAAATTACTTCGTCTTTTGCTGATTTCATTGAGCGCGAAAAGAAACAGAAGAAAA AGGCTGGAGCGTCAGCACCAACTAACGAGGATGAGAAAGAAGCTGAGGAAGTTGTCGAGGCAGCAGAACAGGAAACTGAAGAAACAAAGGAGGTAGCAGC ACCTGTAGCTGCTAAACAAAAGGCTAAGAGGGAGAATACTGTTCGATACAGGAACCGAGTCAGGGTCCCCGAAGGTCCTCCCAGGGCTCTCCTGAAGAAG AAGAAGTCAATGAACTACTTGCTGTGGGCTGTTCCTGCTGGCATCGTAGCTGTTCTCCTGGTTGTGCTTGCGTACCTGTATCTCCTTTGA
AA sequence Show only first row Show all	>Lus10005546 pacid=23139671 polypeptide=Lus10005546 locus=Lus10005546.g ID=Lus10005546.BGIv1.0 annot-version=v1.0 MGVEVVSSDVAHVTVEAVNEVDNSVLHEKENGKLEKESGPNEAIKFGSHEREVENGDSNDVVDPKLPQNALEEWPAEPKQVHSFYFVKWWPYDDPKIKAK IDLVGKEITKRNEALTRVNDRTRAKRDERAELIAELRPLKTQGYELRNVLGEKRKEMQPLQQALGKMRNNNGAGRGAICSSEEELNELIYSMQYHIQHES IPLSEEKQILREIKQLEGTREKVIANAAMIAKIQDSLGQKESIQDQVKHMNVDMDSARKEHDLIWSKIDKLKAKIEALDKEIESIDVERQAIKLKRDEAF DSLRQIREQRDEGNSQVYVSRKVVNHARQLSFSKDVQAIQQLCHEEGEKFMSVWNNDKAFRNDYEKRLLSSLDKRVLSRDGRIRNPGEKPLVAHEALLPS EPLPVAKAVKKPEEPKSVVKKEAPAKNVQKVTEKKTAKTAPEKIEEVEEEVAGLEIAPKATPAAAPVDEAKLKELKREEEIAKAKLAMERKKKLAEKAAA KAAKRAEKEAEKKLKEITSSFADFIEREKKQKKKAGASAPTNEDEKEAEEVVEAAEQETEETKEVAAPVAAKQKAKRENTVRYRNRVRVPEGPPRALLKK KKSMNYLLWAVPAGIVAVLLVVLAYLYLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27500		PPI1	proton pump interactor 1 (.1)		Lus10005546 [exp]	0	1
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	4.5	0.7425
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10027536 [exp]	6.2	0.7156
AT4G27500		PPI1	proton pump interactor 1 (.1)		Lus10041932 [exp]	13.3	0.7218
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	16.1	0.6351
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	34.4	0.6188
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	46.1	0.6012
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	65.2	0.5615
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	88.5	0.5529
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	98.6	0.5386
AT4G02715			unknown protein		Lus10022059 [exp]	124.1	0.4816

Compare expression of checked genes

Lus10005546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.