Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61930 288 / 2e-94 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 270 / 1e-86 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 254 / 2e-80 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 155 / 9e-44 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041933 [exp] 662 / 0 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 290 / 5e-95 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 297 / 5e-93 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10041934 [exp] 257 / 1e-85 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 265 / 1e-84 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 257 / 1e-81 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 244 / 2e-76 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 174 / 1e-50 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10027182 [exp] 97 / 1e-22 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106200 [exp] 307 / 2e-101 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 280 / 1e-90 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 266 / 7e-85 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 256 / 5e-81 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 153 / 4e-43 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10005547 pacid=23139632 polypeptide=Lus10005547 locus=Lus10005547.g ID=Lus10005547.BGIv1.0 annot-version=v1.0 ATGAGGCCCAATTTTGGAACGATACCGTATAGTGTAAGGATTGTTTCAAGGTGTAATTTTTGGCGGACTTTGACTGTATGCTCTGCAGTCTCAACAACAA CAACTTGTACAGAGCTTCCCAGGAAACTTAAGAAATCTGAAAGGAAACCTTGGGTCACGAGTGTGAATGAGCTCAAGCGGGAGGCTAGGCTAGAGAGGAA AGAGAAACAGTCAGCGGACGAGAAAATTTTGCGGCCGCCTGAGAACGGGCTACTGGTCAAGGAATTGATCCCTGTTGCTCATGAAGTTCATGCTGCCAGA GCTGAATTATTGGGTTGTGTCTCGAATGTTGCCAAGAGAATTGCTCTGTACTCATGCAGTATTTGTGGAGAAGTTCATGTTGGTTATCCTCCGCACAAGA TCAGGACTTGCGATGGAATTGGAAGCCTGAAAAACAAAGAGCATATGTGGATGAAGGGAGGTGTAGAACACATTTTCCCTCTAGTCGAATCTTTCCATCT TTATGACAGACTGGGGAGAGCAGTTTCTCATAATGAGCAGCTCCTAGTAGACCGGATTCCGGCAGTTGTGGAACTGTGTATCCAATGTGGCGTTGACATA CCAGAGTATCCAACAAGAAGAAGAGCCTTCCCTGCTTATAGTGTTGCTGGTAGAATTATTGATTTTGAACGCAGATTCCCCAAAGAAGAAGAGCCACCAG GACAAGACATTAACACTAGTGGATTTTGGGAGAAGAGAAGAAACCCAATCCAGGGAATCGAATCCTCACACACTAGTCTTAACGATATACAAGAGTTTGC TAGCCGAGGAATGAAATCATGGGAGTTCATGAGATCAGGGATCCAGAAACTCATGAGCAAGTACACCGTTCATACGTGTGGATATTGCCCCGAGGTTCAA GTGGGTAGAAATGGTCACAGAGTAAGAAACTGCCAAGCTTACAAGCATCAAATGAGAGATGGTCAACACGGATGGCAGGAGGCTACTGTTGATGATTTGG TTCCTCCAGTCTATGTATGGCATGTCCGGGATCTCAGAAGTCAGGAGCCCATGGTCCATGAACTGCGAAGGTATTATGGGATGTTGCCCGCAGTGGTGGA ACTTTTCGCTCAGGCTGGTGCACCAGTCGGCAGTGATTACACTGGCCTGATGAGAGAAGACATTGCAGTGCCTGAACTGGATGAATCTAAGTTAGCAGTT TGA
AA sequence Show only first row Show all	>Lus10005547 pacid=23139632 polypeptide=Lus10005547 locus=Lus10005547.g ID=Lus10005547.BGIv1.0 annot-version=v1.0 MRPNFGTIPYSVRIVSRCNFWRTLTVCSAVSTTTTCTELPRKLKKSERKPWVTSVNELKREARLERKEKQSADEKILRPPENGLLVKELIPVAHEVHAAR AELLGCVSNVAKRIALYSCSICGEVHVGYPPHKIRTCDGIGSLKNKEHMWMKGGVEHIFPLVESFHLYDRLGRAVSHNEQLLVDRIPAVVELCIQCGVDI PEYPTRRRAFPAYSVAGRIIDFERRFPKEEEPPGQDINTSGFWEKRRNPIQGIESSHTSLNDIQEFASRGMKSWEFMRSGIQKLMSKYTVHTCGYCPEVQ VGRNGHRVRNCQAYKHQMRDGQHGWQEATVDDLVPPVYVWHVRDLRSQEPMVHELRRYYGMLPAVVELFAQAGAPVGSDYTGLMREDIAVPELDESKLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10005547 [exp]	0	1
AT5G19485			transferases;nucleotidyltransf...		Lus10026802 [exp]	3.9	0.7508
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	13.5	0.7901
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	18.6	0.7328
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	27.6	0.6520
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10043479 [exp]	27.9	0.7378
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10004716 [exp]	33.6	0.7095
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	46.6	0.7221
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	47.1	0.7230
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	50.0	0.7440
					Lus10026804 [exp]	60.9	0.6464

Compare expression of checked genes

Lus10005547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.