Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15270 133 / 1e-39 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT2G33810 130 / 4e-39 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 129 / 3e-38 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT3G60030 131 / 1e-35 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT2G47070 125 / 3e-33 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G69170 121 / 6e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G57920 117 / 6e-32 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT2G42200 117 / 2e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G27360 117 / 2e-31 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G02065 116 / 2e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041935 [exp] 244 / 2e-82 AT2G33810 113 / 4e-32 squamosa promoter binding protein-like 3 (.1) Lus10018610 [exp] 130 / 5e-38 AT3G15270 127 / 7e-37 squamosa promoter binding protein-like 5 (.1) Lus10039846 [exp] 128 / 2e-37 AT1G53160 129 / 8e-38 squamosa promoter binding protein-like 4 (.1.2) Lus10015421 [exp] 117 / 7e-34 AT2G33810 128 / 4e-39 squamosa promoter binding protein-like 3 (.1) Lus10013999 [exp] 117 / 1e-33 AT2G33810 128 / 6e-39 squamosa promoter binding protein-like 3 (.1) Lus10004523 [exp] 125 / 2e-33 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10010071 [exp] 125 / 4e-33 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10021034 [exp] 120 / 8e-33 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 119 / 9e-33 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398200 [exp] 159 / 9e-50 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.011G116800 [exp] 152 / 2e-46 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.007G138800 [exp] 135 / 5e-40 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1) Potri.004G046700 [exp] 130 / 6e-39 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.011G055900 [exp] 125 / 3e-37 AT2G33810 129 / 2e-39 squamosa promoter binding protein-like 3 (.1) Potri.014G057800 [exp] 126 / 7e-35 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.002G142400 [exp] 122 / 4e-33 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.016G048500 [exp] 120 / 7e-33 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.002G142200 [exp] 119 / 7e-33 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.002G188700 [exp] 123 / 1e-32 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10005548 pacid=23139657 polypeptide=Lus10005548 locus=Lus10005548.g ID=Lus10005548.BGIv1.0 annot-version=v1.0 ATGGATTTCCGCACAACACTACTGCCTAACGATCATCAGGTGGATGATGATGAAGTGGAAGATCAGCAGCTGCAGGAATTTGATCATGAAGTGATCGGCA GCTGGAAGAAAGGAGCTGGAGGTCTGCCTCCACCGCGAAGAGCCTCGAATCTGTGTTGCCAGGTTGAGAGGTGCGGCGCGAATTTGAGCGAAGGGAAGCA GTACCACCGTCGCCATAAGGTCTGCGACTTCCACTCCAAATGTCCTTCTGTCCTTGTCTCCGGCCTCCGCCAGAGGTTTTGTCAGCAATGCAGCAGGTTC CACGAGGTGTCGGAGTTCGATGAAGCGAAGAGGAGCTGCCGGAGGAGGTTGGCCGGGCACAACGAAAGGCGGAGGAAGAGCTCGTCCACCACGGCGGCGG AGAGCAGTAACTATGGAGGAGGCATTTCAGCTCAGATGCAGCAGCATCAATGTACTAATAACAGCAGGCAATCCGACATTAATAATACTGATGGAGGGAT TAGGTTTCAGCAGGTTGCGGCGGCTGGGAATCTCAACTACAAACGATCCCAAATCAGATATTAA
AA sequence Show only first row Show all	>Lus10005548 pacid=23139657 polypeptide=Lus10005548 locus=Lus10005548.g ID=Lus10005548.BGIv1.0 annot-version=v1.0 MDFRTTLLPNDHQVDDDEVEDQQLQEFDHEVIGSWKKGAGGLPPPRRASNLCCQVERCGANLSEGKQYHRRHKVCDFHSKCPSVLVSGLRQRFCQQCSRF HEVSEFDEAKRSCRRRLAGHNERRRKSSSTTAAESSNYGGGISAQMQQHQCTNNSRQSDINNTDGGIRFQQVAAAGNLNYKRSQIRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	0	1
					Lus10039892 [exp]	7.5	0.9412
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10037649 [exp]	9.3	0.8330
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	10.9	0.9394
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	13.1	0.9390
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10008557 [exp]	14.1	0.8831
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	15.7	0.9387
					Lus10032968 [exp]	17.6	0.9347
AT2G23200			Protein kinase superfamily pro...		Lus10012646 [exp]	18.3	0.8729
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	19.3	0.9334
					Lus10026042 [exp]	20.8	0.9334

Compare expression of checked genes

Lus10005548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.