Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53900 375 / 4e-128 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 350 / 2e-118 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 110 / 2e-26 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT2G31280 71 / 9e-13 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 68 / 4e-12 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 59 / 5e-09 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041936 [exp] 706 / 0 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10012986 [exp] 112 / 3e-27 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 108 / 2e-26 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 107 / 1e-25 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 104 / 5e-25 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10033880 [exp] 57 / 2e-08 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033222 [exp] 47 / 4e-05 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10001527 [exp] 44 / 0.0002 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397800 [exp] 451 / 2e-157 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 442 / 4e-154 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 119 / 1e-29 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.010G096400 [exp] 108 / 3e-26 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.005G222500 [exp] 72 / 3e-13 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 71 / 5e-13 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.009G017700 [exp] 54 / 2e-07 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 49 / 4e-06 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.006G090000 [exp] 49 / 4e-06 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G144900 [exp] 49 / 5e-06 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005549 pacid=23139655 polypeptide=Lus10005549 locus=Lus10005549.g ID=Lus10005549.BGIv1.0 annot-version=v1.0 ATGGTGGGCTCTGGAGATAGGAGAAGGAAAGAAGCGGTGGGGATGATGGCACTTCATGATGCACTCAGAGCCGTCTGTCTCAATTCAGACGACTGGTCTT ACTCTGTTTTCTGGACTATTCGTCCTCGCCCGAGGGTCAGAGGTGGTAATGGTTGCAAGGTTGGAGACGACAATGGAAGCTTGATGTTGATGTGGGAAGA TGGGTATTGCCGAGGAGGTGAAAATGGGTTCGACGATGGGGAGGATGATCCAGTCCGGAAAGCTTTCAGCAAAATGTCAATTCAGTTGTACAACTATGGA GAAGGGTGGGTACTCGGTGGGTTCTTGCTTATTGTTAAGAAAGGTTTCATCTTGGTGGTGTTGATGGGGAAGGTGGCTTCAGATAAGTGTCATAAATGGG TGTTCAAGGAGCCGTCATCTGAATCTGAACAGAATATCTCCAACTACTGGCAGAGCTCTTTTGATGCTATTCCAACTGAATGGACTGATCAATTTGAGTC TGGCATTCAGACCATTGCTGTGATTCAAGCTGGCCATGGACTTCTCCAGCTGGGTTCCTGCAAGATTATACCAGAAGATCTGCATTTTGTGTTGAGAATG AGGCATACATTTGAGTCACTAGGGTACCAATCTGGCTTCTACCTATCCCAGCAGCTCTTCTCATCCACCAGGAACAACAACAATTCGTCCTCATCCTCGA CCTCGATCCTGCCTTCGAAGCAACCCGGTCTGATCCCACCGCAGCTTTTCAACTATGGCCAACAAAGGCCACTGTTTGCATCACCAAATTTCCAGAACCC TGCTGGAGGAGGAGGAAGAATGGTGGGGTTGTTCCCTCATCAGGCGAAAGAAGAGCCACCGCATATGTTCCTTCACCCGAATTCTTCGGAAGGAGGGATG ATCGGTGGAGGGCCGGAGCAAGAGAATGACATCAAGTGGCCAAATGGGCTGTCTTTCTTCAGTGCACTAACTGGCAGGACAGAGGACCATGCCAAGCTCT TGTTCAACCCTGAAGATAGCTTGGGGAACAAGGTGGTGGAGAACAACGCAAACTCCGATGCTGCTTCGGATATGCTTAATAGCAACAGCTTCTTGAGCTT GGACAGTGGTGGCAAAATGGATCAGGACAAGTACAAGAGGGGGTTCAGTAATGCTAGAATGGGTGGTTCTTCATCTTCTTCTACTTCAGTTGATCATCAC CATCAGCAGCAACAGCAAGGGGTTGAGTATCGGAATTCGGAGCAACGGATGTACCCGGATGTGATGGAGACCTACTTGGAATGA
AA sequence Show only first row Show all	>Lus10005549 pacid=23139655 polypeptide=Lus10005549 locus=Lus10005549.g ID=Lus10005549.BGIv1.0 annot-version=v1.0 MVGSGDRRRKEAVGMMALHDALRAVCLNSDDWSYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGYCRGGENGFDDGEDDPVRKAFSKMSIQLYNYG EGWVLGGFLLIVKKGFILVVLMGKVASDKCHKWVFKEPSSESEQNISNYWQSSFDAIPTEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRM RHTFESLGYQSGFYLSQQLFSSTRNNNNSSSSSTSILPSKQPGLIPPQLFNYGQQRPLFASPNFQNPAGGGGRMVGLFPHQAKEEPPHMFLHPNSSEGGM IGGGPEQENDIKWPNGLSFFSALTGRTEDHAKLLFNPEDSLGNKVVENNANSDAASDMLNSNSFLSLDSGGKMDQDKYKRGFSNARMGGSSSSSTSVDHH HQQQQQGVEYRNSEQRMYPDVMETYLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53900			Serine/threonine-protein kinas...		Lus10005549 [exp]	0	1
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	2.2	0.8470
AT5G26800			unknown protein		Lus10015444 [exp]	8.5	0.8657
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	11.0	0.8565
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	11.4	0.8497
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	21.2	0.8354
AT4G30820			cyclin-dependent kinase-activa...		Lus10024924 [exp]	23.2	0.8071
AT4G22000			unknown protein		Lus10008487 [exp]	24.6	0.8473
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10014714 [exp]	30.0	0.8379
					Lus10005096 [exp]	34.0	0.8436
AT5G13340			unknown protein		Lus10035960 [exp]	38.1	0.8168

Compare expression of checked genes

Lus10005549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.