Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 1161 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 1145 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 905 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 854 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 819 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 741 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 727 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 714 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 705 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 702 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041937 [exp] 1541 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 1170 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 1124 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 879 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 804 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 710 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 692 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 594 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 349 / 6e-111 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106400 [exp] 1295 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 1281 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 1277 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 1274 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 1210 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 1209 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025800 [exp] 1039 / 0 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 983 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 963 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385900 [exp] 896 / 0 AT1G53440 889 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10005550 pacid=23139649 polypeptide=Lus10005550 locus=Lus10005550.g ID=Lus10005550.BGIv1.0 annot-version=v1.0 ATGTACAGTACAGCTTATCTCTCGTTAGGATTATTGCAGAAGTATGCCCCTGAACGTTGCATTATTGGCATTGAAGCCCCCTCCATAATGATTTCTAACA TTTTAGCCCTTATTATGCATACAGTTGAAGCACTAGCAGAAATATCCAGGAAGTTTCAGAACACCGGATGGAATGCCGTCAGGAGGAATTCATGTGGCAG CCCCGAGTGGAATCGAATGATTATCCCTGTCAACATCGAAAGCAACGTTACCTGCGACTGCTCTTTCTCCAGTGGCACTGTTTGTCATGTCATCGCCATG AAGCTGAAAGGCTTTAACTTGACAGGAATTCTACCACCTGAACTCGGCAACCTTACCCATTTAACTGAATTGGACCTAACCCGCAACTACATCAACGGAA CCATCCCACGAAGTCTCGGGCAGCTTTCTAACCTCACTGTTTTGTCTCTTCTTGGAAACAGACTGAGTGGCCCTATCCCTTCTGAAATAGGCAACATTGC TAATTTGCAATCTCTGGTGTTGGAAGATAATCTATTCACAGGACCTCTGCCTCGAAGCCTTGGAAACCTGAGAAGCTTGACTAGACTCCTTCTTTCTGCA AACAACTTCACAGGTTCCATACCGGATAGCTTCGGAAATTTGAGAAACCTAACTGACTTTAGGATAGATGGGAGCAGTTTGTCTGGACGGTTGCCAGAAT TCATGGGGAACTGGACCAATCTTAAGCGACTGGATTTGCAAGGCACATCATTGCAGGGTCCTATTCCTTCTAGCATTTCCACGTTAAAGAAGTTGACAGA CTTGAGGATATCAGACTTGACTGGAACAAGTTCGGTTTTCCCGGATCTTAAGGAACTGACGAAGATGAAAGAACTAGTACTGCGAAACTGCTTGATGACT GGTTCAATCCCAGATTACATTGGAGAAATGACACCGTTGAAAACTTTGGATTTGAGCTTCAACAGTTTGTCAGGTCCTATACCAGCCACCATGCAGAGTT TGGAAAGCTTGGATTACACGTTTCTGAATAACAACTCATTAACCGGAGAAGTGCCCGGTTGGATATTGAGCACTAAAAACAAATTTGACTTGTCTTACAA CAACTTTACCGGGACGGTGCAACCTAGTTGTACCCAGAATGACGTGAACCTGGTTTCTAGTTATTCATCGAGCTCGGTACCTTGGTGCTTGAAGAAGGAC CTACCTTGCTCTAGGAATCCCCGGTTTCACAAGCTTTTTATCAATTGTGGAGGCCCCCGAACGGATTTTCAGGATGAAGAATATGAAGAAGACCTAACAT CGCAGGGGCCAACAACTTTCTTCTCAGTACAGGAAAAATGGGCTTACAGCAGTAATGGAATCTATGTGGGCAATGATAGTGCTGATTATGTGGCACGAAA CAATTACGGTCACAATGTTACCAGTATTTATGAGAATGCACGCCTAGCTCCTCAATCGCTCAAGTACTATGCATTGTGCATGCTGAAAGGAAGTTACACT TTGAAGCTCCACTTTGCTGAGATCATGTTCTCCAATGATCAAACTTTTAGTAGCCTTGGAAGACGCATATTTGATATCTCAATTCAAGGAAGGGTAGTCC GACGAGACTTTGATATCATGGAAAAAGCTGGAGGAGTTGGTATTGGCATCACAGAGATTTTTGATAATGTTACTGTGGATAGTAGTACTTTGGAGATACA TTTGTATTGGTCTGGAAAAGGCACAAATGCTGTTCCTCATAGAGGTGTTTATGGACCACTCATTTCCGCCATTACTGTGACTCCAAACTTCCCGGTCGAT GAAGGAGGAGGTGGTGGTTTATCAGGAGGAGCCATTGCTGGCATTGTCGTTTCTGCATTTGTAGCTGTTCTGTTCATTGGTGGAATCATCTACAAGAAAA CAAGGAAGGAAGATGAAAATCAAGAACTACGAGGACTCGATCTCCAGACTGGCTTTTTCACCTTGAGACAGCTCAAACATGCTACTAATAACTTCGATGC TACAAATAAGATTGGAGAAGGAGGATTTGGGCCTGTTTACAAGGGTATGCTTGCCGATGGCGGTGTAATTGCAGTGAAACAGCTATCCTCCAAATCAAAA CAAGGAAACCGCGAATTCGTGAACGAAATAGGCATGATATCTGCATTGCAGCATCCGAATCTCGTCAAGCTTTATGGATGTTGCATTGAAGGAAATCAGC TCTTGCTCGTGTATGAGTACTTGGAAAACAACAGTTTGGCTCGTGCTCTATTCGGTCATCGGGAAGGCAAATTGATGCTGGACTGGCAAACAAGGAGAAA AATACTGCTTGGGATTGCAAAGGGACTGTATTACCTCCATGAGGAGTCGAGGCTAAAAATCGTACACAGAGACATCAAAGCAACAAATGTCCTGCTTGAT AAAGACCTCAACGCCAAGATTTCAGACTTCGGGTTGGCCAAGCTCGACGAAGAAGAGAACACACACATTAGCACCAGAATTGCTGGAACTATAGGATATA TGGCTCCTGAGTACGCAATGAGAGGTTACTTGACAGACAAGGCAGACGTGTACAGCTTTGGAATCGTCATTCTCGAGACAGTTAGTGGAAAGAGCAACAC AAACTATAGGCCAAAAGAAGAGTTTGTTTACCTCCTTGATGGGGCATATGTGCTGCAAGAGCAAGGAAACCTGCTAGAGCTGGTGGATGAAGAACTGGGA TCAAACTTCTCAAAAGAAGAAGCAAGGAAGCTCCTCAACTTGGCCCTCCTATGCACCAACCCTTCACCAACTCTACGCCCTCCAATGTCGGCGGTGGTGA AAATGATGGAAGGGAAAGCTCCGGTGCAAGCTCCAATCATCAAGCGAGGAGAGAGCGATGCCAGCAGCCAAGATGCGAGGTTCAGGGCGTTTCAGACACT GTCACAGGACAGCCATACAAACATAGCCATACCAACATCACGACTGGTTCATGGGAAAGCAGAAGCGATCCGAATCAGAAGAGCATTTCGATGGATGCGC CTTGGACGACTTTGGACACATCTTCGGTGA
AA sequence Show only first row Show all	>Lus10005550 pacid=23139649 polypeptide=Lus10005550 locus=Lus10005550.g ID=Lus10005550.BGIv1.0 annot-version=v1.0 MYSTAYLSLGLLQKYAPERCIIGIEAPSIMISNILALIMHTVEALAEISRKFQNTGWNAVRRNSCGSPEWNRMIIPVNIESNVTCDCSFSSGTVCHVIAM KLKGFNLTGILPPELGNLTHLTELDLTRNYINGTIPRSLGQLSNLTVLSLLGNRLSGPIPSEIGNIANLQSLVLEDNLFTGPLPRSLGNLRSLTRLLLSA NNFTGSIPDSFGNLRNLTDFRIDGSSLSGRLPEFMGNWTNLKRLDLQGTSLQGPIPSSISTLKKLTDLRISDLTGTSSVFPDLKELTKMKELVLRNCLMT GSIPDYIGEMTPLKTLDLSFNSLSGPIPATMQSLESLDYTFLNNNSLTGEVPGWILSTKNKFDLSYNNFTGTVQPSCTQNDVNLVSSYSSSSVPWCLKKD LPCSRNPRFHKLFINCGGPRTDFQDEEYEEDLTSQGPTTFFSVQEKWAYSSNGIYVGNDSADYVARNNYGHNVTSIYENARLAPQSLKYYALCMLKGSYT LKLHFAEIMFSNDQTFSSLGRRIFDISIQGRVVRRDFDIMEKAGGVGIGITEIFDNVTVDSSTLEIHLYWSGKGTNAVPHRGVYGPLISAITVTPNFPVD EGGGGGLSGGAIAGIVVSAFVAVLFIGGIIYKKTRKEDENQELRGLDLQTGFFTLRQLKHATNNFDATNKIGEGGFGPVYKGMLADGGVIAVKQLSSKSK QGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGHREGKLMLDWQTRRKILLGIAKGLYYLHEESRLKIVHRDIKATNVLLD KDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVILETVSGKSNTNYRPKEEFVYLLDGAYVLQEQGNLLELVDEELG SNFSKEEARKLLNLALLCTNPSPTLRPPMSAVVKMMEGKAPVQAPIIKRGESDASSQDARFRAFQTLSQDSHTNIAIPTSRLVHGKAEAIRIRRAFRWMR LGRLWTHLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	0	1
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	2.2	0.8606
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009672 [exp]	4.7	0.7829
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	4.9	0.8309
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	5.7	0.8394
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	5.9	0.8080
AT1G03290			unknown protein		Lus10012381 [exp]	8.8	0.8126
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	11.8	0.7974
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	11.8	0.7852
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	12.7	0.8025
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	17.3	0.7890

Compare expression of checked genes

Lus10005550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.