Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 69 / 6e-15 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT4G26110 68 / 1e-14 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 68 / 1e-14 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT3G13782 45 / 1e-06 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001235 [exp] 112 / 3e-31 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042106 [exp] 112 / 4e-31 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042097 [exp] 103 / 3e-27 AT4G26110 232 / 5e-72 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011956 [exp] 69 / 5e-15 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 69 / 5e-15 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 68 / 2e-14 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10027615 [exp] 67 / 2e-14 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 67 / 2e-14 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001231 [exp] 61 / 4e-12 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148600 [exp] 71 / 1e-15 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 69 / 7e-15 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 63 / 7e-13 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 61 / 3e-12 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 59 / 2e-11 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 56 / 2e-10 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 54 / 9e-10 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10005551 pacid=23139635 polypeptide=Lus10005551 locus=Lus10005551.g ID=Lus10005551.BGIv1.0 annot-version=v1.0 ATGAAGAACAACGACATCCTATCGAAAGAGATACAATCGGAGGAGGCCGAAGAAGCTCTGATGTTGTTGAAGGATGTTATGTGGAGCAGACTACTCACGA GGACAATCAGCCTCATTCCAACAAAAGGATTTGGGCTCAATTTTCACTTCGATCCGACAAATAACCCTTGTTTCGAAAACTCTGTCCTGACCAAGACGTA CCACATGGCTTACGGACAGTCGGATTATAGCGAGCCGCTTGTTGAGAAAGCTTTCCGGACGGAGAACCAGCAGCGTGGAGATAAGTATTTGATCAAGATC GAGTGA
AA sequence Show only first row Show all	>Lus10005551 pacid=23139635 polypeptide=Lus10005551 locus=Lus10005551.g ID=Lus10005551.BGIv1.0 annot-version=v1.0 MKNNDILSKEIQSEEAEEALMLLKDVMWSRLLTRTISLIPTKGFGLNFHFDPTNNPCFENSVLTKTYHMAYGQSDYSEPLVEKAFRTENQQRGDKYLIKI E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	0	1
					Lus10034718 [exp]	1.0	0.9404
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033450 [exp]	3.0	0.9140
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029333 [exp]	3.2	0.9133
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	5.5	0.9057
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10029900 [exp]	5.7	0.8815
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	7.1	0.9242
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	7.6	0.9384
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10016308 [exp]	10.4	0.8187
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	10.4	0.9326
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	11.0	0.9270

Compare expression of checked genes

Lus10005551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.