Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14830 494 / 5e-173 unknown protein AT1G53450 483 / 3e-169 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041938 [exp] 791 / 0 AT3G14830 523 / 0.0 unknown protein Lus10014986 [exp] 60 / 8e-10 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106600 [exp] 624 / 0 AT3G14830 598 / 0.0 unknown protein Potri.003G026500 [exp] 590 / 0 AT3G14830 593 / 0.0 unknown protein Potri.001G386700 [exp] 581 / 0 AT3G14830 586 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005552 pacid=23139629 polypeptide=Lus10005552 locus=Lus10005552.g ID=Lus10005552.BGIv1.0 annot-version=v1.0 ATGTCAGTGGAGAGATCATTTGAAGCTTGGGAGGAGGTTCAGCGCCATGGCCACGACCTCGCGGACAGGCTTGCGCAAGGGTTCTCGGGTCTTATCCAAA CTCATATCCCTAATCCACCTTCAATTCCATGGTCTTACGACACGAAATCGAAGATCTTTGATCTTGACTTCCCGGGGCACAGTTTCAAGGCCATGGATTT CAGCGTCCTGGCGGACAACAACGCTGGGAAGGCTGGGATATCTGCTGTTCTAGGTATTGGGAACAAGATTGGAGAAGCCGGTGCTGAGTTCGGAGCTTCC TTGAACGGATTGGTGGAGCAGTTCTATAGGAGATTGCCTGTTCAGTTCAAGCATGAGCAGAGTGTGGAGCTTGGTGTAAGGATTGAGAGCAGAAGGAGTG ATGTCAATTTGAGTGTTGAAGGACAGCTAGGGTTGGTAAATACCAAGTTGAAGGAATTCGGGTTTGTGGAGAATGAAGAGGGATTCGTCAGTACAGCTGA GGGAGCTGCTGCTGATGGGGAGTTGGGGACGTTTGACTTGAAATCCATTGGTCTTATGGGTAAAACTCAGGGAACGTTAAATTTTACATCGACTTATGAA AGTAGAACAGGTAATGTGGACAGCTCGATGGTTGCCAGGGGAGATCTATGGAGAGTGGAAGCTTCACATGATAGTTCCACATCAGGAAATGATAATTCGT CTCTCTTCCTAGTCCAGCTTGGTCCAGTTCTCTTTGTTCGTGATAGTACACTTCTTCTACCTGTTCATCTATCAAAGCAACATTTGCTTTGGTATGGCTA CGATAGGAAGTCATTTGTCGATTTTCAATTTCCGAACGGGCAGCTAACCTATACATCCGGTGAAGGTCTGACAACAAGTGCTTTTCTGCCCGTGTTTGGC GGACTTCTTCAAGCTCAGGGTCAATATCCTGGTGAAATGAGGTTCAGCTTCTCTCACAAGAACAAGCGGGGAACCCGTATAACACCGATGATACAGTGGC CCGACAAGTCATTTACATTGGGTTTTGAGCAAAGCTTAGCATGGAAGAGATCTGGTCTCATGATGAGGCCAACAGTTCAGTGCAGTTTATGCCCCACGCT TGGTGGAAGCAATCCCGGGCTGAGAGCGGAAATTCTGCATTCCCTGAATGAGCGGCTGAATTTTGTATGTGGCTGTGCATTCGCCCAGCAGCCTTCGGTA TTCGCAGCAGCCTCTATTGGCAGGTCGAAGTGGAACGGTAACATCGGTAGTTCTGGGATCGTTCTGAGAGTGGAGAGTCCTCTCTCGCAGGGTGTTAGTC GGCCTTCGTTGTCTGTGCAGATAAACAGTGCTGTCGAGTTTTGA
AA sequence Show only first row Show all	>Lus10005552 pacid=23139629 polypeptide=Lus10005552 locus=Lus10005552.g ID=Lus10005552.BGIv1.0 annot-version=v1.0 MSVERSFEAWEEVQRHGHDLADRLAQGFSGLIQTHIPNPPSIPWSYDTKSKIFDLDFPGHSFKAMDFSVLADNNAGKAGISAVLGIGNKIGEAGAEFGAS LNGLVEQFYRRLPVQFKHEQSVELGVRIESRRSDVNLSVEGQLGLVNTKLKEFGFVENEEGFVSTAEGAAADGELGTFDLKSIGLMGKTQGTLNFTSTYE SRTGNVDSSMVARGDLWRVEASHDSSTSGNDNSSLFLVQLGPVLFVRDSTLLLPVHLSKQHLLWYGYDRKSFVDFQFPNGQLTYTSGEGLTTSAFLPVFG GLLQAQGQYPGEMRFSFSHKNKRGTRITPMIQWPDKSFTLGFEQSLAWKRSGLMMRPTVQCSLCPTLGGSNPGLRAEILHSLNERLNFVCGCAFAQQPSV FAAASIGRSKWNGNIGSSGIVLRVESPLSQGVSRPSLSVQINSAVEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14830			unknown protein		Lus10005552 [exp]	0	1
AT3G14830			unknown protein		Lus10041938 [exp]	1.0	0.9647
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	2.0	0.9226
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	2.4	0.9369
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	3.5	0.9249
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	5.5	0.9102
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	6.0	0.8943
AT1G70160			unknown protein		Lus10029209 [exp]	8.4	0.9107
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	10.2	0.8955
AT1G13990			unknown protein		Lus10036787 [exp]	10.4	0.8878
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	10.6	0.8877

Compare expression of checked genes

Lus10005552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.