Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78630 329 / 7e-115 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1) AT3G01790 79 / 9e-18 Ribosomal protein L13 family protein (.1.2) AT5G48760 45 / 1e-05 Ribosomal protein L13 family protein (.1.2) AT3G24830 45 / 1e-05 Ribosomal protein L13 family protein (.1) AT3G07110 44 / 3e-05 Ribosomal protein L13 family protein (.1.2) AT4G13170 43 / 7e-05 Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041940 [exp] 383 / 1e-135 AT1G78630 317 / 4e-110 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10014597 [exp] 79 / 2e-17 AT3G01790 309 / 3e-108 Ribosomal protein L13 family protein (.1.2) Lus10032063 [exp] 78 / 8e-17 AT3G01790 308 / 3e-107 Ribosomal protein L13 family protein (.1.2) Lus10016679 [exp] 47 / 2e-06 AT5G48760 386 / 9e-139 Ribosomal protein L13 family protein (.1.2) Lus10032599 [exp] 47 / 3e-06 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10043151 [exp] 47 / 3e-06 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10007137 [exp] 47 / 4e-06 AT5G48760 384 / 6e-138 Ribosomal protein L13 family protein (.1.2) Lus10011857 [exp] 46 / 6e-06 AT5G48760 394 / 8e-142 Ribosomal protein L13 family protein (.1.2) Lus10022793 [exp] 46 / 6e-06 AT5G48760 390 / 2e-140 Ribosomal protein L13 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384600 [exp] 334 / 1e-116 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.011G106100 [exp] 333 / 2e-116 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G334000 [exp] 83 / 3e-19 AT3G01790 299 / 2e-104 Ribosomal protein L13 family protein (.1.2) Potri.017G066000 [exp] 83 / 4e-19 AT3G01790 266 / 3e-91 Ribosomal protein L13 family protein (.1.2) Potri.017G054600 [exp] 48 / 2e-06 AT5G48760 351 / 5e-125 Ribosomal protein L13 family protein (.1.2) Potri.001G314500 [exp] 47 / 3e-06 AT5G48760 384 / 7e-138 Ribosomal protein L13 family protein (.1.2) Potri.002G242600 [exp] 46 / 5e-06 AT4G13170 357 / 4e-127 Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [flax] [poplar] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Lus10005553 pacid=23139636 polypeptide=Lus10005553 locus=Lus10005553.g ID=Lus10005553.BGIv1.0 annot-version=v1.0 ATGGCGCTGCTTCACGGCTCATCCTCCATTGTTTTACCACCATCTTCTTCTACTTTCCTCTCTTCATCTTCGTCGTCAAATCCCAGCAGCATTGTTAGTA CCAGCAGTCCTTTCGTGGTCGGATTCTCTGGCGCAAGGTTGCAGCTTTCTGCGCGGAAGTCTTGGGCTATTGGTTCCCAGAAGACAGCTTTCAAGCTCCC TCCTCCATTTCCCCCCAAGAAGAAGGAGAAGAAGGAGAAAAAGGAAAAGCCCCCTCACATCCCTGTTGACCAACGCTGGATGGTTGAAGAATCTGAAGTC GGCGGTCCTGATATTTGGAACACGACGTGGTATCCTAAAGCTGCTGATCATGTGAACACTGAAAAGCCATGGTTCATTGTAGATGCAACTGACAAGATTT TGGGGAGATTGGCATCGACCATTGCTATTCATATCCGTGGGAAGAATTTGGGAACATTCACTCCCAGTGTGGACATGGGTGCTTTTGTGATTGTGGTGAA CGCAGAGAAAGTCGCTGTATCTGGGAAGAAGAGAACCCAAAAGTTATACAGGAGGCATTCTGGAAGACCAGGTGGGATGACAGTAGAGACCTTTGATCAG TTGCAGCAAAGGATCCCAGAAAGGATTATCGAACATGCGGTCCGTGGAATGCTTCCTAAAGGGAGGCTTGGGAGAGCACTGTTCAACCACCTGAAAGTTT ACAAGGGACCAGACCATCCTCATGAGGCTCAAATGCCCAAGGAGTTGCCGATAAGGGACAAAAGAATACAAAAGCAGACTTAG
AA sequence Show only first row Show all	>Lus10005553 pacid=23139636 polypeptide=Lus10005553 locus=Lus10005553.g ID=Lus10005553.BGIv1.0 annot-version=v1.0 MALLHGSSSIVLPPSSSTFLSSSSSSNPSSIVSTSSPFVVGFSGARLQLSARKSWAIGSQKTAFKLPPPFPPKKKEKKEKKEKPPHIPVDQRWMVEESEV GGPDIWNTTWYPKAADHVNTEKPWFIVDATDKILGRLASTIAIHIRGKNLGTFTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQ LQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQMPKELPIRDKRIQKQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	0	1
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	1.0	0.9891
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	1.4	0.9873
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	1.7	0.9848
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	2.2	0.9742
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	2.8	0.9698
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	3.0	0.9698
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	3.6	0.9665
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	4.0	0.9774
AT1G62780			unknown protein		Lus10032229 [exp]	4.7	0.9566
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	4.9	0.9719

Compare expression of checked genes

Lus10005553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.