Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78620 407 / 4e-143 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013691 [exp] 544 / 0 AT1G78620 404 / 7e-142 Protein of unknown function DUF92, transmembrane (.1.2) Lus10038149 [exp] 391 / 4e-138 AT1G78620 349 / 1e-121 Protein of unknown function DUF92, transmembrane (.1.2) Lus10042501 [exp] 339 / 9e-118 AT1G78620 306 / 3e-105 Protein of unknown function DUF92, transmembrane (.1.2) Lus10017753 [exp] 42 / 0.0003 AT5G19930 402 / 1e-142 Protein of unknown function DUF92, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105700 [exp] 426 / 1e-150 AT1G78620 392 / 7e-137 Protein of unknown function DUF92, transmembrane (.1.2) Potri.001G384300 [exp] 421 / 1e-148 AT1G78620 416 / 1e-146 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [flax] [poplar] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Lus10005554 pacid=23139665 polypeptide=Lus10005554 locus=Lus10005554.g ID=Lus10005554.BGIv1.0 annot-version=v1.0 ATGGCGCTGTCCACACTTCTGTACATCAATCCATCTCCATCCCTTCTCCTCCATCTCAATTCCCCCAAATCCACCGCCGCCATAATCAAACACTCATCCT CCTCCTCCTCCTCAATCTCTAGCATCACCTCAACAAGAACCCTCCTTCGCCGACCTAAAGCATTCTCGATGCTGCAATCCGTCGTACCAGAAGCCATCGC CGTGCTCCAATCTCCCGTCCCGACCTGGCAATCCGCTCTCCTCAACAATCTCTTGATTTTCACCCTCGGATCTCCGATTCTCGTCTCCGGCCTCTCCTTC CCTGGCATTTCCGCAGCTTTCTTGCTCGGAACCCTCACATGGCGCGCATTTGGCGCCTCCGGATTCCTTCTTGTCGCAGCTTACTTTGTCATAGGAACTG CAGTTACGAAGGTGAAAATGGCGGAAAAGGAAGCTCAGGGAGTTGCTGAGAAGAGGAAAGGGAGAAGAGGACCTGGCAGCGTGATTGGTTCCAGCGCTGC TGGATGTGTTTGTGCTCTCTTGTCAATTTATGGAGTTGGTGGAGAAGGGTTCTCACAGCTTTGGTTGATTGGATTCGTTGCCAGTTTCTGTACCAAGTTG AATGATACTGCTTCCAGTGAGATTGGCAAGGCTTATGGCAAAACTACGTACCTTGCTACCACATTTAAGGTTGTTCCTAGGGGAACAGAAGGGGCTGTGA GCGTTGAGGGAACTTTAGCTGGATTTCTCGCAGCCATCATTCTTGCCTCGATTAGCTGTCTGATGGGTCAGATAGATGGGAGTGAAGCAGTGATATGTGT GATTGCCTCCCAGATTGCAAACTTTGGCGAGAGCTTGATAGGTGCAGTATTTCAAGAGAAGGATGGATTTGGCTGGCTTAACAACGATGCAGTGAATGTA ATTAACATATCTTTTGGGAGCATATTAGCAGTTGTAATGCAGCAAGCATTGCTCCAAAACTGGGGAACATCATGA
AA sequence Show only first row Show all	>Lus10005554 pacid=23139665 polypeptide=Lus10005554 locus=Lus10005554.g ID=Lus10005554.BGIv1.0 annot-version=v1.0 MALSTLLYINPSPSLLLHLNSPKSTAAIIKHSSSSSSSISSITSTRTLLRRPKAFSMLQSVVPEAIAVLQSPVPTWQSALLNNLLIFTLGSPILVSGLSF PGISAAFLLGTLTWRAFGASGFLLVAAYFVIGTAVTKVKMAEKEAQGVAEKRKGRRGPGSVIGSSAAGCVCALLSIYGVGGEGFSQLWLIGFVASFCTKL NDTASSEIGKAYGKTTYLATTFKVVPRGTEGAVSVEGTLAGFLAAIILASISCLMGQIDGSEAVICVIASQIANFGESLIGAVFQEKDGFGWLNNDAVNV INISFGSILAVVMQQALLQNWGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78620			Protein of unknown function DU...		Lus10005554 [exp]	0	1
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	1.4	0.8219
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	2.4	0.7769
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	11.8	0.7644
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	14.3	0.7718
					Lus10033740 [exp]	19.0	0.6912
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10017874 [exp]	19.8	0.6776
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	22.7	0.7513
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	33.2	0.6857
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	34.1	0.7062
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021377 [exp]	34.6	0.6665

Compare expression of checked genes

Lus10005554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.