Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78610 67 / 5e-13 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 65 / 3e-12 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G53470 49 / 7e-07 MSL4 mechanosensitive channel of small conductance-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038148 [exp] 124 / 2e-32 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 124 / 2e-32 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10012516 [exp] 45 / 3e-05 AT1G78610 336 / 9e-108 mechanosensitive channel of small conductance-like 6 (.1) Lus10022654 [exp] 44 / 5e-05 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105500 [exp] 71 / 5e-14 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 70 / 7e-14 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 41 / 0.0003 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005555 pacid=23139658 polypeptide=Lus10005555 locus=Lus10005555.g ID=Lus10005555.BGIv1.0 annot-version=v1.0 ATGTCGGTCAGGACCACTGACCGGCGGGACGTGTTCCTCGACATGAATGGCGGTGGTGGTACTTCACCAAAACTAGTCTCCGGCCCCGGCGCCGCTGCTG CTCCGGTTGGGAATATGTGGAGAGAAACTAGCTACGATTACCTGCAAGACGTATCGGAGGAGGATGAGCAGAGCAAAAAGGAGAATGAGTCGGACGTCGG CGGCGTGAGCTACCGATTCGACTTCAATCCGGCGCATAGTACTATTATCAAGGGCGGAGGAGGAAACAACGCTACAGCAGCAGCTCCTCCGCTGCCGCCT ACTCTGGCGGCAGCGGAGGATCCGCCGTCGAAGCTTATTGGCCAGTTTCTACACAAACAGAAGGCTTCCGGTGACTGCTGTTTGGATATGGAATTGGACA TGGCGGAGCTTGCTCCCGTAGCAGTTCATCAACAACAACAAGTCTCCTTCGAGTCAAGCGACTCGATAAGGAAGAGGCTGCAGGCTCACAGATTCAAGGA ATCTCCCGGAATTCATTCGACCACAGACAGTCCCGCCGCCGCCGCCGGCGGCGACGGAGGAGAGGGTTTGGAGTGCAGCTCTACGGAACAGGGCCGGTCA GCAGATGAAATCTGGGATTTTAGGGAGAGGCAGTCAGATTGA
AA sequence Show only first row Show all	>Lus10005555 pacid=23139658 polypeptide=Lus10005555 locus=Lus10005555.g ID=Lus10005555.BGIv1.0 annot-version=v1.0 MSVRTTDRRDVFLDMNGGGGTSPKLVSGPGAAAAPVGNMWRETSYDYLQDVSEEDEQSKKENESDVGGVSYRFDFNPAHSTIIKGGGGNNATAAAPPLPP TLAAAEDPPSKLIGQFLHKQKASGDCCLDMELDMAELAPVAVHQQQQVSFESSDSIRKRLQAHRFKESPGIHSTTDSPAAAAGGDGGEGLECSSTEQGRS ADEIWDFRERQSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	0	1
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	2.2	0.9196
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	2.4	0.8936
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	4.0	0.8506
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	4.7	0.9100
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	4.9	0.8786
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	10.8	0.8409
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	11.4	0.8774
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	15.3	0.8499
AT3G18350			Plant protein of unknown funct...		Lus10013865 [exp]	19.2	0.8264
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	22.7	0.8423

Compare expression of checked genes

Lus10005555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.