Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14810 715 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G53470 709 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 704 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 665 / 0 Mechanosensitive ion channel family protein (.1) AT2G17010 492 / 4e-166 Mechanosensitive ion channel family protein (.1) AT5G12080 453 / 1e-151 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 421 / 7e-139 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 46 / 8e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038148 [exp] 915 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 913 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10013692 [exp] 707 / 0 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10022654 [exp] 664 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 657 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 648 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10004153 [exp] 552 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10002960 [exp] 444 / 3e-150 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 446 / 9e-149 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105500 [exp] 880 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 865 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 738 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 608 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G144100 [exp] 479 / 3e-161 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 477 / 3e-160 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 447 / 3e-149 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 442 / 1e-147 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10005556 pacid=23139662 polypeptide=Lus10005556 locus=Lus10005556.g ID=Lus10005556.BGIv1.0 annot-version=v1.0 ATGATCTGTGGGAGGTTAGTCTCAGGATGGCTGATAAGGTTGATTGTGTTCTTCATTGAGAGGAACTTCCTGCTTCGAAAGCGGATTCTGTACTTCGTTT ACGGGGTTAAGAAAGCTGTGCAGAACTGTCTATGGTTAGGACTGGTGTTGATAGCTTGGCATTCTTTGTTTGACAAGAAAGTTGAGAAGGCAACTGGAAG TAGATTTCTCACGTATGTCACCAAAGTTCTATTATGTCTACTGGTAGGAACATTGCTATGGCTGATCAAGACCCTTGTGGTTAAAGTACTCGCTTCGTCT TTCCATGTGAGCACTTACTTCGATCGAATCCAGGAGTCGTTGTTCAACCAGTATGTGATCGAGACTCTTTCCGGTCCTCCATTGATCGAGATGCAAAACA ATGAGGAGGAGGAGGAGAGTCTTCTTGCTGAGGTGCAAAGATTGCAGAATGCTGGTATCGATGTGCCTACAGCACTCAAGGCAGCTACGTTCCGGTCGCC TCACCCGAGTAGAGTGATTGGTAGTGGTCAGCTACAGAAGAGTAGTGTTCTGAGTGGTGGTACGCCGAGGGGCTCTGGTGCTTTGGCTAGTACTGATGAA GAGGGTCATGGTGCAATAACGATTGACCACTTGCATAAGTTGAACAATAAGAACGTTTCCGCCTGGAATATGAAGAGGCTGATGAATATAATCAGACGTG GTGGTTTGTCGACGCTGGATGAGCATATTAAGGAGTCTGCTCATGATGGTGATGATGAATCCACTACGAATATCAGAAGTGAGTGTGAAGCTAAGGCTGC TGCTAGGAAAATCTTTCAAAATGTGTCCAAACCCGGTTCAAGGTTTATTCTCTTTGATGATCTTTTGCGGTTTATGCAAGAAGATGAGGCTACAAAAGCG ATGAGTCTTTTCGAAGGAGCACCAGAAAGTCAAAAGATTAGCAAGACATGCTTGAAGAATTGGGTGGTCAATGCTTTCAGAGAACGAAGAGCACTGGCTT TGAGCCTGAACGACACCAAGACAGCAGTGAACAAGTTGCACCGGATAGTGAATGTTCTAGCCGCGGCAGTGATCACAATCATATGGCTTCTCATGTTGGG GATAGCCACCACCAAATTCCTGCTCTTTTTAAGCTCCCAACTTGTTCTAGTAGCATTCATTTTCGGCAACACCTGCAAAACCGTCTTCGAAGCGATTATA TTCTTGTTCGTGATGCACCCATTCGACGTAGGGGACCGTTGCGAAATCGACGGCGTTCAGCTGGTGGTTGAAGAGATGAACATCCTGACCACCGTTTTCT TAAGGTTCGACAACCAGAAGATAATGATACCAAACAGCGTCCTCGCCACGAAAGCCATCGGTAACTACTACCGCAGCCCTGACATGGGTGATGGAGTTGA GTTTTTAATCCATGTCGCCACTCCAGCTGAGAAGATTGCTGCTATCAAGCAAAGAATCAACGCATACATCGACACCAAAAAAGACCATTGGTACCCGTCA CCAATGATCATATGCATGGAGGCGGAGGATTTGAACCGGGTCCGGATGGCAGTGTGGTTGTGCCACAGGATCAACCATCAAGACATGGGAGAGAAGTTCC TGAGAAGGTCGTTGCTGATCGAAGAGATGGTTAAGATCTTTAAAGAGCTGGACATGCAGTACCGGTTGCTTCCCGTTGACATCAACATCCGAGCATTGCC TCCCGTGTCCTCCGACCGAGTCCCGCCAAGTTGGGCAGCAGCTTGA
AA sequence Show only first row Show all	>Lus10005556 pacid=23139662 polypeptide=Lus10005556 locus=Lus10005556.g ID=Lus10005556.BGIv1.0 annot-version=v1.0 MICGRLVSGWLIRLIVFFIERNFLLRKRILYFVYGVKKAVQNCLWLGLVLIAWHSLFDKKVEKATGSRFLTYVTKVLLCLLVGTLLWLIKTLVVKVLASS FHVSTYFDRIQESLFNQYVIETLSGPPLIEMQNNEEEEESLLAEVQRLQNAGIDVPTALKAATFRSPHPSRVIGSGQLQKSSVLSGGTPRGSGALASTDE EGHGAITIDHLHKLNNKNVSAWNMKRLMNIIRRGGLSTLDEHIKESAHDGDDESTTNIRSECEAKAAARKIFQNVSKPGSRFILFDDLLRFMQEDEATKA MSLFEGAPESQKISKTCLKNWVVNAFRERRALALSLNDTKTAVNKLHRIVNVLAAAVITIIWLLMLGIATTKFLLFLSSQLVLVAFIFGNTCKTVFEAII FLFVMHPFDVGDRCEIDGVQLVVEEMNILTTVFLRFDNQKIMIPNSVLATKAIGNYYRSPDMGDGVEFLIHVATPAEKIAAIKQRINAYIDTKKDHWYPS PMIICMEAEDLNRVRMAVWLCHRINHQDMGEKFLRRSLLIEEMVKIFKELDMQYRLLPVDINIRALPPVSSDRVPPSWAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	0	1
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	3.0	0.8975
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	3.5	0.8848
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	5.5	0.8662
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	6.0	0.8843
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	6.5	0.8722
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	6.9	0.8749
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	9.5	0.8687
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	9.8	0.8564
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	9.9	0.8670
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	12.2	0.8740

Compare expression of checked genes

Lus10005556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.