Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 350 / 8e-111 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 129 / 8e-31 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032337 [exp] 344 / 2e-104 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10022109 [exp] 50 / 4e-07 ND / Lus10030063 [exp] 50 / 4e-06 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104000 [exp] 1002 / 0 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 985 / 0 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 342 / 4e-108 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 328 / 4e-102 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 330 / 8e-102 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 330 / 1e-101 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 293 / 2e-87 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 288 / 4e-86 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 284 / 5e-84 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.012G059200 [exp] 123 / 4e-29 AT1G18560 953 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF02892 [flax] [poplar] zf-BED BED zinc finger CL0361 [flax] [poplar] PF05699 [flax] [poplar] Dimer_Tnp_hAT hAT family C-terminal dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10005558 pacid=23139625 polypeptide=Lus10005558 locus=Lus10005558.g ID=Lus10005558.BGIv1.0 annot-version=v1.0 ATGGAAGGATTAAAGGATTCTACTGTCAAAAAGCCTAAAAGATTGACATCTGTTGTGTGGAACCACTTTGAACGGGTAAGGAAGGCTGATTCGTGCTATG CTCTTTGTGTGCATTGTAACAAGAAACTTAGTGGATCAAGTAACAGCGGGACTACTCACCTGAGAAATCACTTAATCCGATGTTTGAAAAGGTCAAATTA TGATGTAACGCACCTATTTGATGCAAAGAAGAAGAAAACGGAAACCTCCTTTGCTATTGCAGACGTCAGTCACGTTGTTCAAAGACAAGATGATTGCACC AAATTCCCAGTTGTAAGTTTTCATCAAGAGCAAAGAAATCATGGAGTTCTTAACGTGGGGGGTCGTCGATTCAGTCAACAGCGTAGTCATTTGGATCTTA CCTGCATGATTTTATTGCATGGTTATCCGCTGACCATGGTTGAGGATGCTGGGTTCAGAGGATTTGTGAAGAATCTCCAGCCGGTGTTCCAGGTTGTGCC AAACGGTTCTGTTGAGCTCTCATGCATGGAAATTTACGAGAAGGAGAAACGGAGAGTGCATGAGTTGATAAGCAGATTAAATGGTAGGATTAACCTTGCA GTTGAGAAGTGGAGTTGTCCGGAAAACAACCATTACCTGTGTTTGACGGCACAGTTCATTGATGATGTTTGGAAGCTGCGGAAGAAAGTTCTGAACTTTG TGACTCTGGAAGCCGCTCATACTGAAGATATGCTTTCAGAAGTGATTATCAAATGCCTTTCGGAGTGGGGTGTTGAGTGCAAGTTGTTTGCCATGACATT CGATGACTGTCTCACAGATGATGACATTGTTGAGATGATAAAGAATGGCACCTCCCAGAGCAGGCCATTTTTCAGCAATGGTCAACTTTTCGATATTAGG TCTGCTGCTCATGTTGTAAATTTGATGGTACAAGATGCCATTGAAGCACTCTGCGAGGTTAACCAGAAGATTAGAGAAAGTTTCAGAAATGTCAAAAGTT CAAGGGAAATGCAGGTCAAGTTCAACGAGATTGCTCAGCAGGTTGGTATCGACTGTACAAAAAATTTGGTTCTTGATTCGCCACTACGGTGGAGCTCGAC GTACTACATGGTCGAAACAGCCCTACATTACAAGGATGCATTTTGCTTTTTGCAAGAACATGACCCGGCCTATAACGCATCAGTGTTATCTGAGACAGAA TGGGAAAGGGCGAGTTCTATAACTGGTTTTTTGAAACTTTTTGAAGAGATAACCAATGTCTTCGCTGGAAGTAAATGTCCGACAGCCAACATCTATTTTT CTGAGATATGCGGCGTTCATATCCAACTAATTGAATGGTGTAAGAGTTCAGATAGCTTCCTTAGTTGCATGGCCTCTAAGATGAAAGGCAAGTTTGATAG ACATTGGAGCAAGTGCAGTTTGGCTTTGGCAATTGCTGCCATCTTAGATCCTCGATTCAAGATGAAACTGGTGGAGTACTACTACTCTCAGATCTACGGC AGCACAGCCTTGGATCGAATCAAGGAGGTTTCCGAGGGCATAAACGAACTTTTCAGTGCATACTCTATTTGTTCAACCTTGGTTGATCAAGGTTCAACAC TTCCCGGCAGCAGCCTACCGGGCACTAGCACTGATAGCAGGGACAGGTTAAAGGGGTTTGACAAATTCCTGCATGAGACTTCTCATAGCCAGACTCTTTC ATCTGACCTGGATAAATATTTAGAAGAACCAGTCTTTCCTCGCAACTGTGATTTTAACATCTTAAACTGGTGGAAAGTCCACGCACCAAGATACCCTGTC TTATCTATGATGGCACGGGATGTTTTAGGGACACCCATGTCGAATGTCTCACTAGACATGGTATTCAGCACCAGAGGAAGGATGCTTGATGCTTACAGAA GCTCACTAAGCCCAGACATTCGACAGGCTTTGATATGTACTCATGATTGGTTGCAAATTGAACAAGAAGGTTTGTGCTTGTACATGATTCCAGTTTCTCG AATATCGTTTCAAATCTTTTTCTGCCAGCTAACTCTTTTTTCTTGTTTTACCAGAACTCGTGCCGTCCTCTCCCTTGGCTATCTGCGTTGA
AA sequence Show only first row Show all	>Lus10005558 pacid=23139625 polypeptide=Lus10005558 locus=Lus10005558.g ID=Lus10005558.BGIv1.0 annot-version=v1.0 MEGLKDSTVKKPKRLTSVVWNHFERVRKADSCYALCVHCNKKLSGSSNSGTTHLRNHLIRCLKRSNYDVTHLFDAKKKKTETSFAIADVSHVVQRQDDCT KFPVVSFHQEQRNHGVLNVGGRRFSQQRSHLDLTCMILLHGYPLTMVEDAGFRGFVKNLQPVFQVVPNGSVELSCMEIYEKEKRRVHELISRLNGRINLA VEKWSCPENNHYLCLTAQFIDDVWKLRKKVLNFVTLEAAHTEDMLSEVIIKCLSEWGVECKLFAMTFDDCLTDDDIVEMIKNGTSQSRPFFSNGQLFDIR SAAHVVNLMVQDAIEALCEVNQKIRESFRNVKSSREMQVKFNEIAQQVGIDCTKNLVLDSPLRWSSTYYMVETALHYKDAFCFLQEHDPAYNASVLSETE WERASSITGFLKLFEEITNVFAGSKCPTANIYFSEICGVHIQLIEWCKSSDSFLSCMASKMKGKFDRHWSKCSLALAIAAILDPRFKMKLVEYYYSQIYG STALDRIKEVSEGINELFSAYSICSTLVDQGSTLPGSSLPGTSTDSRDRLKGFDKFLHETSHSQTLSSDLDKYLEEPVFPRNCDFNILNWWKVHAPRYPV LSMMARDVLGTPMSNVSLDMVFSTRGRMLDAYRSSLSPDIRQALICTHDWLQIEQEGLCLYMIPVSRISFQIFFCQLTLFSCFTRTRAVLSLGYLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42170			BED zinc finger ;hAT family di...		Lus10005558 [exp]	0	1
AT3G18310			unknown protein		Lus10025089 [exp]	15.8	0.7056
AT5G53060			RNA-binding KH domain-containi...		Lus10005915 [exp]	28.6	0.6866
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	31.3	0.6900
AT3G60380			unknown protein		Lus10042896 [exp]	101.8	0.6075
AT3G53970			proteasome inhibitor-related (...		Lus10032055 [exp]	108.6	0.5601
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10037152 [exp]	110.2	0.5873
AT1G74680			Exostosin family protein (.1)		Lus10024214 [exp]	113.1	0.5991
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10014598 [exp]	229.1	0.5558

Compare expression of checked genes

Lus10005558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.