Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78580 1464 / 0 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G16980 1033 / 0 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 1006 / 0 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G17000 952 / 0 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT4G17770 456 / 1e-146 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 436 / 4e-139 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G06410 434 / 3e-138 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G60140 418 / 5e-132 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G23870 417 / 2e-131 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 411 / 1e-129 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013694 [exp] 1785 / 0 AT1G78580 1501 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10015243 [exp] 1318 / 0 AT1G78580 1354 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005412 [exp] 1310 / 0 AT1G78580 1338 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10034585 [exp] 456 / 1e-146 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 444 / 5e-142 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10015231 [exp] 427 / 1e-135 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 426 / 3e-135 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015509 [exp] 426 / 6e-135 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10005425 [exp] 425 / 8e-135 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103900 [exp] 1548 / 0 AT1G78580 1538 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.001G383600 [exp] 1539 / 0 AT1G78580 1493 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.004G064600 [exp] 1333 / 0 AT1G78580 1305 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.010G104500 [exp] 452 / 5e-145 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.001G139500 [exp] 451 / 2e-144 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.003G094500 [exp] 450 / 2e-144 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.008G136500 [exp] 441 / 7e-141 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 424 / 2e-134 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.011G070900 [exp] 423 / 6e-134 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.018G097700 [exp] 420 / 8e-133 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10005559 pacid=23139633 polypeptide=Lus10005559 locus=Lus10005559.g ID=Lus10005559.BGIv1.0 annot-version=v1.0 ATGCCTGCAAACCAGTACCACGGTAACTCAACCCCTTACCCAGGTCGTGTGGAGCGTCTCTTGAGAGAAAGAGAGCTCAGGGAACTGAGGAGAAGCAATA GGGCTGAGGTGAATGGTAATCATCATAGAGGTGAATCAAGTGAACTAGAGTTACGCTTCAGGGAGAGTGATCTTCAGAAGAATTCCTACATTGAACAGTA CTTGGAAGAAGCTGCTGCTGCCACAAGGGCACTTAATAAAGAAGGAGGATGTGAAGGCCATGATGGGAGGCCTTTAAGGCAACGCTTACTCGTCGTAGCT AACCGGCTGCCTGTGTCTGCTGTTAGAAGAGGTGAAGATGCTTGGTCTTTGGAGATTAGCGCTGGAGGTCTAGTTAGTGCACTTCTCGGCGTGAAGGAAT TCGAAGCAAGATGGATAGGCTGGGCTGGTGTTAATGTGCCAGATGAAGTAGGCCAGAAAGCACTTACAAAAGCTTTGGCCGAGAAGAGATGCATACCAGT GTTCCTTGATGAAGAAATTGTTCATCAATATTATAATGGCTACTGCAACAATATACTATGGCCTCTTTTTCACTATCTTGGTCTTCCCCAAGAAGATCGC CTTGCCACAACCAGAAGCTTTCAGTCTCAGTTTGCTGCATATAAGAAGGCCAATCAAATGTTTGCTGATGTAGTAAACAAGCACTATGAAGAGGGGGATG TTGTCTGGTGCCATGATTATCACCTTATGTTTCTGCCGAAATGCCTCAAGGACTACAACAGGAACATGAAAGTTGGTTGGTTTCTCCACACACCTTTTCC TTCATCTGAAATCCACAGGACACTGCCTTCTAGATCAGAGCTACTCCGTTCAGTTCTTGCTGCAGATTTAGTAGGATTTCATACATATGACTATGCAAGA CACTTTGTTAGTGCTTGCACTCGTATTCTTGGACTTGAGGGCACACCTGAGGGAGTTGAGGACCAAGGCAAGCTAACCCGAGTAGCAGCTTTTCCTATTG GGATAGATTCAGAGAGATTTATCTCAGCGCTAAACCTCCCCCAGGTACAGGAGCACATAAAAGAACTAACTGAAAGATTCCGTGGCCGTAAGGTGATGTT AGGTGTTGATCGTCTGGATATGATTAAGGGAATACCACAAAAGATACTTGCATTTGAAAAGTTCCTCGAGGAGAACCCTCTCTGGCGTGATAAAGTTGTT CTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCTGAATATCAGAAGCTTACCAGTCAGGTTCATGAAATCGTTGGACGCATAAATGGCCGATTTG GGACATTAACTGCTGTTCCAATTCACCACCTGGACCGGTCTCTGGATTTCCATGGCTTGTGCGCTCTCTATGCTGTTACTGATGTAGCCCTTGTTACCTC ATTGCGTGACGGAATGAATCTTGTTAGTTATGAGTTCGTAGCATGCCAAGCTTCAAAGAAAGGTGTTCTTATTCTCAGTGAGTTTGCAGGTGCTGCTCAG TCTCTCGGTGCCGGAGCAATCCTAGTGAACCCTTGGAACATTACTGAAGTTGCTGATTCAATTCGTCAAGCTTTGACTATGTCATCTGAGGAACGAGAGA AACGGCATCATCACAATTTTGCGCATGTGACAACTCACACAGCTCAAGAATGGGCTGAAATGTTTGTTAGTGAGCTCAATGATACGGTGGTTGAGGCTCA ACTAAGGACAAGACAAGTTCCGCCTTTGCTTCCACAAGAAGCTGCAATCAATTGTTTTCTGAAATCCCATAATCGATTGCTCATACTGGGATTCAATGCT ACGTTGACAGAGCCAGTAGACACTCCTGGAAGAAGAGGTGATCAAATCAAAGAAATGGAACTTAAATTGCACCCGGAGCTGAAGGAATCATTGCTGAAAC TTTGCCGTGATACAAAGACAACGATTGTTGTCCTCAGTGGTAGTGACAGAGGTTTGTTAGATGAGAATTTCGGGGACTATGACATGTGGCTGGCGGCAGA GCATGGAATGTTCTTACGTCTTACGAAGGGAGAATGGATGACAACCATGCCGGAACACTTAAACATGGAGTGGGTCGACAGTCATGTGTTTGAGTACTTC ACAGAGCGGACACCAAGGTCGCATTTTGAACTCCGTGAAACATCACTCGTGTGGAACTACAAGTATGCAGACGTGGAATTCGGAAGACTTCAAGCGAGGG ACATGTTGCAGCACCTCTGGACTGGCCCGATTTCAAATGCATCAGTCGATGTGGTCCAAGGTAGCCGGTCAGTTGAGGTCCGAGCAGTTGGCGTAACAAA GGGTGCAGCAATCGATCGTATATTGGGAGAAATTGTTCATAGCAAGCAAATGACAACACCAATTGACTATGTCTTGTGTGTCGGCCATTTTCTGAGAAAG GATGAAGACGTATACTCATTCTTCGAGCCGGAGCTCCCATCCGACGGCCTAGGTGTGATGAGAAGCAAGCAAAGCGAAAGTTCGAAGCCAGCTGGGGACA GGCGGCCTTCTTCACGGAAGCTTCCGGGGAGCAGCAGCAGGGGGGGAGGAGGAGCAAAGGCATCATCTCAAAGCAAGCCTACTCAGCGCGCTGTTCTGCA CCCGGATAGACTGAGCAGTACTAGTTTCAGCAACAGCAACGGGCGTAGGGCATCGCCGGAGAAGATATCGTGGAATGTGCTCGATCTTAAGGGAGACAAC TACTTCTCTTGTGCAGTCGGGAGGACACGAACGAACGCTCGCTACATGCTCGGATCATCGGATGACGTGGTCTCGTTTCTGAAGAAGCTGACCAATGCAT CATCGTTTTCTTCGGGGTAA
AA sequence Show only first row Show all	>Lus10005559 pacid=23139633 polypeptide=Lus10005559 locus=Lus10005559.g ID=Lus10005559.BGIv1.0 annot-version=v1.0 MPANQYHGNSTPYPGRVERLLRERELRELRRSNRAEVNGNHHRGESSELELRFRESDLQKNSYIEQYLEEAAAATRALNKEGGCEGHDGRPLRQRLLVVA NRLPVSAVRRGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDR LATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDYNRNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYAR HFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFISALNLPQVQEHIKELTERFRGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPLWRDKVV LLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHGLCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQ SLGAGAILVNPWNITEVADSIRQALTMSSEEREKRHHHNFAHVTTHTAQEWAEMFVSELNDTVVEAQLRTRQVPPLLPQEAAINCFLKSHNRLLILGFNA TLTEPVDTPGRRGDQIKEMELKLHPELKESLLKLCRDTKTTIVVLSGSDRGLLDENFGDYDMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWVDSHVFEYF TERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKQMTTPIDYVLCVGHFLRK DEDVYSFFEPELPSDGLGVMRSKQSESSKPAGDRRPSSRKLPGSSSRGGGGAKASSQSKPTQRAVLHPDRLSSTSFSNSNGRRASPEKISWNVLDLKGDN YFSCAVGRTRTNARYMLGSSDDVVSFLKKLTNASSFSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	0	1
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	1.0	0.9554
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	2.4	0.9394
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	3.5	0.9209
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	4.0	0.9015
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	4.5	0.8869
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	4.9	0.8759
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	5.2	0.8714
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	5.3	0.8770
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	5.5	0.8679
AT1G11915			unknown protein		Lus10023362 [exp]	6.9	0.8835

Compare expression of checked genes

Lus10005559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.