Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09830 672 / 0 Glycinamide ribonucleotide (GAR) synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013696 [exp] 936 / 0 AT1G09830 733 / 0.0 Glycinamide ribonucleotide (GAR) synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225500 [exp] 701 / 0 AT1G09830 771 / 0.0 Glycinamide ribonucleotide (GAR) synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [flax] [poplar] PreATP-grasp PF02844 [flax] [poplar] GARS_N Phosphoribosylglycinamide synthetase, N domain CL0179 [flax] [poplar] ATP-grasp PF01071 [flax] [poplar] GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CL0105 [flax] [poplar] Hybrid PF02843 [flax] [poplar] GARS_C Phosphoribosylglycinamide synthetase, C domain
Representative CDS sequence Show only first row Show all	>Lus10005561 pacid=23139673 polypeptide=Lus10005561 locus=Lus10005561.g ID=Lus10005561.BGIv1.0 annot-version=v1.0 ATGGCGTGCCTCACTTCCTTCAATGTATCTGCACCTTCCGGTAGACTGCTCCCCGTCGTCATCAACAAACTTAATTTCTCAGCTCCCTTTAATTTACCTA GAAATATCTCTTCTTCTTCCTCTTCTTCTTCGGTGTCCTTCCCAAGGCTTTTCAGCAGTTGGCAGCATTGCGCGAATGGCACTCACCACTCGAGACTGCT TAGTACCTGCTGGCGTGCTTGTGTTCCCCAGCAGCAATCAGGATCCTTGCCTGACTCACCGGATGAGAGAGTGGTTGTATTGGTGATCGGAGGAGGAGGA AGGGAACATGCACTTTGCTATGCCCTAAAGAGATCTCCCTCTTGTGAAACTGTCTACTGTGCCCCTGGTAATGTCGGGATTTCAAAATCCAAGGACGCCA CATGTGTCCCTGAGCTTAATACTGCTGATAGCTCAGCTGTAATCTCCTTCTGCACCAAACAAGGTGTAGGACTTGTCGTAGTCGGGCCAGAGTTACCACT AGTTTCAGGCCTCGCAAATGACCTAGTCAAGTCCGGTATTCCTGTTTTCGGTCCATCAGCAGAGGCTGCTGCTTTGGAAGGCTCCAAGAATTTCATGAAG AGCATATGTGACAAATATGAAATTCCCACTGCCAAGTACCAAACATTTAGTGATGCAGGTGCAGCGAAGAGATACATTCAAGAGCAAGGGGCTCCTATAG TGATCAAAGCAGACGGATTGGCTGCCGGAAAAGGAGTGATCGTGGCAACGACGCTGGAAGAGGCTTTTGAAGCTGTTGATTCCATGCTAGTTGATGCCGT TTTTGGTTCAGCTGGTTGTCAAGTCATTGTTGAGGAATTCTTAGAAGGAGAGGAAGCATCTTTCTTTGCCCTGGTGGATGGAGACAATGCTATTCCATTG GAATCCGCACAAGATCATAAACGAGTCGGTGATGGCGATACAGGACCGAATACAGGTGGCATGGGTGCTTACTCTCCTGCTCCTGTTTTAACTAAGGAGT TGGAGTCAGTAGTTATGGAGACTATAATACTACCTACAGTTAAAGGAATGGCATTGGAGGGCTGTAAGTTTGTTGGGGTTTTATATGCTGGCTTAATGAT CGAGAAAAAGTCTGGATTACCAAAACTTATCGAGTACAATGTCCGGTTTGGAGATCCAGAGTGTCAGGCATTAATGGTTCGTCTAGAATCGGACCTAGTG AAAGTGTTGCTTGCAGCTTGTGAAGGGAAATTAAGCGAAGTATCGTCACTGAACTGGTCTCCAGGGTCAGCCATGGTTGTGGTGTTGGCAAGCAATGGCT ATCCTGGTTCGTATGAGAAGGGAAGTGTTATTCAAAACCTGGAAGAAGCTGAAAATGTAGCTGAAACCGTGAAGATCTTTCATGCCGGAACTGCTCTGGA CTGTGATGGTAACTTTGTATCAGCTGGAGGTCGTGTTCTTGGGGTGACTGCAAAAGGAAGTGATCTTGCTGAAGCAAGGGATAATGCTTATCAAGCTGTG GAGGCAATCAACTGGCCTGGCGGATTCTACAGACGAGACATTGGATGGCGAGCGCTTCCTCAGCAGAAGAAAAGTTGA
AA sequence Show only first row Show all	>Lus10005561 pacid=23139673 polypeptide=Lus10005561 locus=Lus10005561.g ID=Lus10005561.BGIv1.0 annot-version=v1.0 MACLTSFNVSAPSGRLLPVVINKLNFSAPFNLPRNISSSSSSSSVSFPRLFSSWQHCANGTHHSRLLSTCWRACVPQQQSGSLPDSPDERVVVLVIGGGG REHALCYALKRSPSCETVYCAPGNVGISKSKDATCVPELNTADSSAVISFCTKQGVGLVVVGPELPLVSGLANDLVKSGIPVFGPSAEAAALEGSKNFMK SICDKYEIPTAKYQTFSDAGAAKRYIQEQGAPIVIKADGLAAGKGVIVATTLEEAFEAVDSMLVDAVFGSAGCQVIVEEFLEGEEASFFALVDGDNAIPL ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELESVVMETIILPTVKGMALEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQALMVRLESDLV KVLLAACEGKLSEVSSLNWSPGSAMVVVLASNGYPGSYEKGSVIQNLEEAENVAETVKIFHAGTALDCDGNFVSAGGRVLGVTAKGSDLAEARDNAYQAV EAINWPGGFYRRDIGWRALPQQKKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	0	1
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	2.6	0.8613
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10011368 [exp]	5.0	0.7189
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	8.2	0.7818
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	9.8	0.7693
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	10.2	0.7715
AT5G48470			unknown protein		Lus10038234 [exp]	10.4	0.7414
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	11.8	0.7775
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	12.6	0.7934
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	12.8	0.7453
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	14.9	0.7719

Compare expression of checked genes

Lus10005561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.