Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17590 251 / 4e-85 CHE1, BSH BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013697 [exp] 328 / 1e-115 AT3G17590 387 / 3e-138 BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004100 [exp] 252 / 1e-85 AT3G17590 385 / 2e-137 BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04855 [flax] [poplar] SNF5 SNF5 / SMARCB1 / INI1
Representative CDS sequence Show only first row Show all	>Lus10005562 pacid=23139634 polypeptide=Lus10005562 locus=Lus10005562.g ID=Lus10005562.BGIv1.0 annot-version=v1.0 ATGAAGCCGCTGCCGACCTCCAAAACTCCTGTCAAATTCAGAATGCCAACGTCTGAGAACCTAGTACCAATTCGCTTGGATATCGAAGTTGATGGACAGC GCTTCAAAGACACCTTCACCTGGAACCCCTCTGATCCTGATTCAGATGTGGTTGTTTTTGCTAAAAGAACTGTTAAAGACTTGAAGCTTCCTCCTTCTTT CGTTACGCAGATTGCACACTCTATTCAGTCACAGTTGGGTGATTTCAGATCATATCAAGGCCAAGATATGTTCACTGGGGAGAAGATTGTCCCAATCAAG GACATGAACAACTTTGATAGTGACCCTGAAGAATTTTCTAAAACCTTTTGCACTGATTTGGGTATTGAAGACCCTGAAGTTGGGTGCCTTCCAAGCAGGA CAACTGGCCCTGCACTGGACTTCACGAAGCTATTCAGCAACAGATACAGTGTAATACGGAAAAGGAAGGAGTGGGACCTGTACGAGCCAATGGTTGATAT CTTATCGAACGACGAAGTGACTGCGCTTGAGGCAAGGGAAGAGAGGAAAACTCGATGA
AA sequence Show only first row Show all	>Lus10005562 pacid=23139634 polypeptide=Lus10005562 locus=Lus10005562.g ID=Lus10005562.BGIv1.0 annot-version=v1.0 MKPLPTSKTPVKFRMPTSENLVPIRLDIEVDGQRFKDTFTWNPSDPDSDVVVFAKRTVKDLKLPPSFVTQIAHSIQSQLGDFRSYQGQDMFTGEKIVPIK DMNNFDSDPEEFSKTFCTDLGIEDPEVGCLPSRTTGPALDFTKLFSNRYSVIRKRKEWDLYEPMVDILSNDEVTALEAREERKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	0	1
AT1G05430			unknown protein		Lus10006108 [exp]	2.4	0.7982
AT5G17620			unknown protein		Lus10001340 [exp]	3.5	0.8193
AT2G30695			unknown protein		Lus10004791 [exp]	5.3	0.7679
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	5.5	0.7553
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	6.0	0.8086
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	12.7	0.7511
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	16.4	0.7386
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10039207 [exp]	16.5	0.7246
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	16.9	0.7333
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	18.8	0.7415

Compare expression of checked genes

Lus10005562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.