Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10330 543 / 0 ATHPA1, HPA1, HISN6A, EMB2196 HISTIDINE BIOSYNTHESIS 6A, EMBRYO DEFECTIVE 2196, histidinol phosphate aminotransferase 1 (.1.2.3) AT1G71920 543 / 0 HISN6B HISTIDINE BIOSYNTHESIS 6B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013699 [exp] 692 / 0 AT1G71920 609 / 0.0 HISTIDINE BIOSYNTHESIS 6B (.1.2.3) Lus10017934 [exp] 46 / 3e-05 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 46 / 5e-05 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10023080 [exp] 44 / 0.0003 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10018962 [exp] 42 / 0.0008 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113900 [exp] 580 / 0 AT5G10330 612 / 0.0 HISTIDINE BIOSYNTHESIS 6A, EMBRYO DEFECTIVE 2196, histidinol phosphate aminotransferase 1 (.1.2.3) Potri.005G079200 [exp] 42 / 0.0007 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10005564 pacid=23139620 polypeptide=Lus10005564 locus=Lus10005564.g ID=Lus10005564.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCCAGCATATCTGCAGAAAATGTGACTGATGACAAACAGAAAGTGACTGGCGATTCATTTATTCGATCGCACTTGAAAACAATGTCTCCCT ATCAGCCCATTTTACCTTTTGAGGTTTTATCTGCTCGATTGGGTAGGAAGGCTGAGGATATAGTAAAATTGGATGCCAATGAGAATCCTTATGGCCCTCC TCCAGAAGCAAGTGCTGTGATGGAAGCTTTGGGTTCTTTGAAATTTCCTTACATATATCCGGATCCTGAAAGTCGTAGACTTCGAGAGGCCCTTGCAAAA GATTCTGGGCTCGAATCTGACTACATTCTTGTAGGGTGTGGTGCGGATGAGCTAATTGATCTTATTATGCGCTGCACCTTGGATCCTGGTGACAAGATTG TCGATTGTCCTCCAACTTTCACAATGTATGAGTTTGATGCTTCTGTTAATAGGGCTCATGTTATTAAAGTCCCAAGGAAGCCTGACTTTAGCTTAGATGT GGAACTCATCTGTGATGCTGTTAGACGGGAGAAACCGAAATGCATATTCTTGACATCACCAAACAACCCAGATGGGAGTATAATTAAAGATGAAGAGCTG TTGAAAATCCTGGAACTCCCTCTTCTGGTTGTGCTGGATGAAGCATATATCGAGTTTTCAGGTTTAGAATCAAAGATGAAGTGGGTGAAGGAGCACGAAA ACCTGATTGTTCTACGAACATTCAGTAAAAGAGCAGTGGTTCTCACCCCATTTCTTGTTACTGCAAATGCAATGCCAGGTCTAGCAGGACTCCGAGTAGG GTACGGAGCATTTCCTAGTAGTATAATCCAGTATCTCTGGAGAGCTAAGCAGCCATATAATGTTTCTGTTGCTGCTGAAGTTTCGGCATGTGCAGCACTG GAGAATCCCACTTACCTGGAGAGAGTAAAAGATGCGTTAGTACAAGAGCGGGAGAGGCTCTATAAACTTCTGGAGGAAGTGCCCTTTCTGAAACCATTCC CCAGCTATTCCAATTTCATTCTTTGCGAAGTTAAATCCGGTATGGACGCCAAGAAGCTCAAGGAAGATCTAGCGAACATGGGTGTGATGGTTCGACACTA CAGCAAGAAAGAACTGAATGGCTATATCCGGATCTCGGTTGGTAAACCGGAGCAAACCGATGTATTGATGCAGTGCCTAAACTCCATTTCATGA
AA sequence Show only first row Show all	>Lus10005564 pacid=23139620 polypeptide=Lus10005564 locus=Lus10005564.g ID=Lus10005564.BGIv1.0 annot-version=v1.0 MAASSISAENVTDDKQKVTGDSFIRSHLKTMSPYQPILPFEVLSARLGRKAEDIVKLDANENPYGPPPEASAVMEALGSLKFPYIYPDPESRRLREALAK DSGLESDYILVGCGADELIDLIMRCTLDPGDKIVDCPPTFTMYEFDASVNRAHVIKVPRKPDFSLDVELICDAVRREKPKCIFLTSPNNPDGSIIKDEEL LKILELPLLVVLDEAYIEFSGLESKMKWVKEHENLIVLRTFSKRAVVLTPFLVTANAMPGLAGLRVGYGAFPSSIIQYLWRAKQPYNVSVAAEVSACAAL ENPTYLERVKDALVQERERLYKLLEEVPFLKPFPSYSNFILCEVKSGMDAKKLKEDLANMGVMVRHYSKKELNGYIRISVGKPEQTDVLMQCLNSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	0	1
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	2.4	0.8915
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10008637 [exp]	6.5	0.8625
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	10.6	0.8820
AT1G16790			ribosomal protein-related (.1)		Lus10034801 [exp]	11.5	0.8292
AT5G41270			unknown protein		Lus10030018 [exp]	13.8	0.8486
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	14.7	0.8743
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	17.8	0.8765
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031837 [exp]	18.2	0.8571
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	19.1	0.8439
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	19.9	0.8640

Compare expression of checked genes

Lus10005564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.