Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78560 508 / 2e-180 Sodium Bile acid symporter family (.1) AT2G26900 231 / 9e-72 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT4G12030 160 / 5e-45 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT4G22840 151 / 2e-41 Sodium Bile acid symporter family (.1) AT3G25410 139 / 4e-37 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013700 [exp] 710 / 0 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10007016 [exp] 232 / 3e-72 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10006672 [exp] 229 / 1e-70 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10035803 [exp] 199 / 2e-59 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1) Lus10036583 [exp] 192 / 4e-57 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10038237 [exp] 151 / 3e-41 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10025862 [exp] 149 / 1e-40 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10008914 [exp] 140 / 2e-36 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 140 / 3e-36 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103200 [exp] 526 / 0 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 236 / 6e-74 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 216 / 1e-65 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.003G117300 [exp] 144 / 6e-39 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.014G178000 [exp] 143 / 1e-38 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.008G021600 [exp] 52 / 3e-07 AT3G56160 432 / 6e-150 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10005565 pacid=23139659 polypeptide=Lus10005565 locus=Lus10005565.g ID=Lus10005565.BGIv1.0 annot-version=v1.0 ATGCAGTCTTCACTTGCCTTTTCACTCTCCAACAACATCAGATTCAACCCATCGCTGAAAACAACAACCTCATGCCGCCACTTCATAGACTCCTCATCAA CCGCTCGACCCAGCTCGCTTAAATCCGATTTCCCCTCGAAGCCACTCCAGCGTCCAAGTCAGCTCAAGCTACAGTGGTCACACTCACCGTCGCCTTCTTC TCTCCCTGCGAGGTCGACCGTCGCCCGCTGCGGCATTTCATCCAACAATTCGAGCGCAAACGAGGTGAAAGGTATCAGAGCACGGGTTGAGGCTGTTACA GAGGCGATTTCCACTGCATTTCCGATATGGGTGTCGCTGGGTTGCTTGCTGGGACTCCTGAAACCCGCTTCTTACGCTTGGGTTACCCCGAAATGGACCA TCTTTGGACTTACCCTCACTATGCTTGGTATGGGTATGACGCTCACCCTAGATGATCTGAGCAATGCTTTCGCCATGCCTAAGCAGTTGTTTGCTGGGTT CCTTCTCCAGTACTCAGTGATGCCAATGTCAGCATTTCTGGTGAGCAAGATGCTAAATCTGCCGTCCCATTATGCTGCTGGTCTAATATTGGTTGGTTGC TGTCCTGGTGGAACTGCCAGTAATATCGTGGCCTACATTGCACGCGGGAATGTGGCTCTCTCAGTTTTGATGACGGCACTGAGCACTCTGACAGCTGTGG TCATGACACCATTTTTAACAGCTAAACTAGCTGGCCAGTATGTTGCAGTAGATGCAGCAGGATTGTTAACATCAACCATGCAGGTTGTTCTTCTTCCCGT GCTGGCTGGTGCCTTTCTGAATCAGTATTTCCAGAGCTTGGTCAAGTTTGTCTCTCCCTTGATGCCACCTATTGCTGTGGGAACTGTTGCAGTCCTTTGT GGAAATGCAATTGCCCAAAGCTCTTCTGCTATTCTGATGTCTGGCAAACAAGTTGTGCTAGCAGCATGTCTTCTTCACGCTTCAGGGTTTTTCTTTGGAT ATGTACTTTCAAGGATTCTTGGAGTTGACACGGCTTCTTCCCGGACAATTTCTATCGAAGTTGGCATGCAGAACTCGGTGCTTGGGGTGGTTCTTGCAAC TCAGCACTTTGGGAATCCACTCACTGCTGTACCATGTGCAGTCTCTAGTGTGTGCCATTCTATCCTAGGCAGTGTCCTTGCTGGAATCTGGAGACGCAGT GTGCCTCCAGAGAACCAGGACTAA
AA sequence Show only first row Show all	>Lus10005565 pacid=23139659 polypeptide=Lus10005565 locus=Lus10005565.g ID=Lus10005565.BGIv1.0 annot-version=v1.0 MQSSLAFSLSNNIRFNPSLKTTTSCRHFIDSSSTARPSSLKSDFPSKPLQRPSQLKLQWSHSPSPSSLPARSTVARCGISSNNSSANEVKGIRARVEAVT EAISTAFPIWVSLGCLLGLLKPASYAWVTPKWTIFGLTLTMLGMGMTLTLDDLSNAFAMPKQLFAGFLLQYSVMPMSAFLVSKMLNLPSHYAAGLILVGC CPGGTASNIVAYIARGNVALSVLMTALSTLTAVVMTPFLTAKLAGQYVAVDAAGLLTSTMQVVLLPVLAGAFLNQYFQSLVKFVSPLMPPIAVGTVAVLC GNAIAQSSSAILMSGKQVVLAACLLHASGFFFGYVLSRILGVDTASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRS VPPENQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78560			Sodium Bile acid symporter fam...		Lus10005565 [exp]	0	1
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031143 [exp]	3.7	0.8581
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	16.5	0.8437
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	27.4	0.8201
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	28.4	0.8443
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029297 [exp]	34.6	0.8139
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	37.1	0.8421
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	41.1	0.8316
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025679 [exp]	41.7	0.7817
AT3G09000			proline-rich family protein (....		Lus10004824 [exp]	42.2	0.8095
AT5G56120			unknown protein		Lus10008355 [exp]	44.1	0.8276

Compare expression of checked genes

Lus10005565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.